Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0038600

Sequence Length

455 nt

GC Content

0.4571

GAUGAUGGCUUGGAAAAAAGUCCAAUGAAAAAAAAACAGAAGAAGAAAGAGAACAAGGAGAACAAGGAGAAACAAAUGAGUUCUAGGAAAGACAAAGAAGGGGACAAGGAAAGAAAGAAGUCAAAAGAUAAGAAAGAGAAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.00 kcal/mol

Ensemble Metrics

Free Energy: -99.15

Frequency: 0.0000

Diversity: 134.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((((((((......))))..................................(((((................)))))..................(((..............)))..................(((.......)))....((..((((..(((((.....(((.(..(((.((((((.((((..(((.(((((((.(((...(((.(((.....))).)))....((((....))))...((.((.....((((((...(((......(.(.((((.(((.((....(((...(((......))).....)))..)).))).)))).).)......))))))))).....)).)).))).)))))))..)))..).))).))))..)))))..))))......)))))))))..))))).)))))..((((...))))

Thermodynamic Ensemble Prediction

..((((((((((((......)))}..................................{{{{{................)))))........,......{{{{{{..{{..........{{{....}}}...........{{|,.....{|||...}}},..}}}||({{,...||...,,|,}|||,,,{(((({({{......,,|||||,.,,...|||}|||}|..||||,|||,{{{{{{{..,,||||{{.||,||.|,..((((((,..,{{......,,{.((((.(((.{{....(((...{{{......}}}.....)))..,,.))),)))).},},,....,|||||||.......))))..)),)})))))}}..}}||.,,}|}|}}..})}.)}.)))}....)}).))).,,}...}))).)))))..((((...))))