Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0039500

Sequence Length

579 nt

GC Content

0.4525

CUCAAAUCCUUUUAAUAAAGAAGAGCUGACAGCUAUUUUGAAAUUUGGAGCAGAGGAUCUCUUCAAAGAACUGGAAGGGGAGGAAUCAGAACCUCAGGAAAUGGAUAUAGAUGAAAUUUUGCGGUUGGCUGAAACGAGAGAGAAUGAAGUGUCAACAAGUGCAACAGAUGAACUUCUAUCACAGUUUAAGGUUGCCAACUUUGCAACAAUGGAAGAUGAAGAAGAGCUAGAAGAGCGUCCUCACAAGGACUGGGAUGAGAUCAUUCCAGAGGAACAAAGGAAAAAAGUAGAGGAGGAAGAGCGGCAGAAGGAGCUAGAAGAAAUUUAUAUGCUGCCUCGAAUUCGGAGUUCCACUAAAAAGGCUCAGACAAAUGACAGUGACUCUGACACUGAGUCUAAGAGGCAGGCCCAGAGAUCCUCUGCUUCUGAGAGUGAAACGGAAGACUCUGAUGAUGACAAGAAGCCAAAGCGCAGAGGGCGUCCGAGGAGUGUGCGGAAGGACCUCGUGGAGGGAUUUACUGAUGCAGAGAUCCGAAGGUUCAUCAAGGCUUAUAAGAAGUUUGGUCUCCCUCUUGAACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-145.80 kcal/mol

Ensemble Metrics

Free Energy: -156.06

Frequency: 0.0000

Diversity: 159.00

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...(((((((.....((((.((((...)))).)))).............((((((((((((......((.....))((((........)))).......................(((((.(((..(((.((.............)).))).))).)))))........(((((.(((...((((..(((((.......)))))..))))...)))))))).....)))))).)))))).......((((((((....)))))))).....................))))))).)))((.((((.(((((((((.....((((((..(((((((......((....)).......((((((((.....((.(((.....))).))))))))))..)))))))((((((((.((.((((.(((.......))).)))).))))))).((((((......(((...((((.....))))((.(.(((.((.(....).))))).)))..((((((.(((...)))))))))...))))))))).))).))))))...))))).)))).)).))..))

Thermodynamic Ensemble Prediction

(((...,,(((({.....||||,((((...}))).||||....,,.(((((((((((((((({(,.....,||,..{{{((((........))))...............,,....,,(((((.(((..(((.((.............)).))).))).))))}........(((((.(((...((((..(((((.......)))))..))))...)))))))).{({.....))}|((((,...,,,,|(((((((....)))))))}.....,...........,,.|}}}},,..|||({,({,,.{{,|||,,,.....}}}||,},{((((((,,,|,.,,.}}})}.......((((((((.....((.(((.....))).))))))))))..))))))}.}}|||||}||}||||}|||,.{|,{{,,,.,||,.|)))))},,{{{,,.....,|{{...|(((,,,{{|}||(({(,(((.((.(.,..}.})))).}}}..((((((.(((...)))))))))...})}))})),,|||||.....,,,))))),)}))})))}}..))