Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0040800

Sequence Length

392 nt

GC Content

0.3827

GUCAAAGAUAGGAAAAGAGUAGAUGACAAUUAGAAGGUUCUGAUGACUUGGUGAGAUUUUAGUUUGUUUUUUGUUUGGUAAGUGAGAGAAAGAGGUGUCAGUGGUGUCUCAUAUAACAGAAAAUUACAUGAAAUGAGGACUAAACACAAAAGUUGGGCACCAGACGAAUAGGAGGUGGCAGCACAGAGUAUCAAUGUUAUUAAAAAGCUUAGUGAAAGAGUACAGGGAUGCUAAAUUAUAUGGCUAGAAGGUUGAAGCAAGACAAGGUUUUUGAAAGAUGUUACCAUGUUUCUAGUUUGAGGAAAGAACUUGAGUAUAGGGAGAUAUUGAAGGUUCUCAGGAAGGAAAUGAUUUGAUGGCACAUUGCCCCAGAGGAGACUGGAAGGGAUACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-68.20 kcal/mol

Ensemble Metrics

Free Energy: -77.10

Frequency: 0.0000

Diversity: 103.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.........................((((((....))))))....((((((.((((((.(((((((((((((((((..((..((.......((((...((((.((((((....................)))))))))).)))).....))..))))))))))).......(((....)))..((((((..(((.........((((.......)))))))..))))))..........(((..........))))))))))).)......))))).)))))).((((((..((((((((.....(((.(((((......))))).))).))))))))..))))))..((((..((((...)))).))))...)))((.........))

Thermodynamic Ensemble Prediction

(((................,.....,|.((((((....)))))),,,.((((((.((((({.{(({(({((((((((((..((..,{.,.....((((...((((.((((((....,,..........,,..)))))))))).)))).....}}..}}})))))))},..,..,{({.,..)}}..((((((..(((,,((.....{{,,.}}.....}}})))..)))))).........,({{....,}}},.}}|,|||}},,,},,,...))))).)))))).|||(({..{((((({,.....(((.(((((......))))).))).))))))}}..}}}}}}..,{{,..((({...}))){|||,...)))((.........))