Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0042500

Sequence Length

311 nt

GC Content

0.5048

GCUCAGACAAAUGACAGUGACUCUGACACUGAGUCUAAGAGGCAGGCCCAGAGAUCCUCUGCUUCUGAGAGUGAAACGGAAGACUCUGAUGAUGACAAGAAGCCAAAGCGCAGAGGGCGUCCGAGGAGUGUGCGGAAGGACCUCGUGGAGGGAUUUACUGAUGCAGAGAUCCGAAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-82.70 kcal/mol

Ensemble Metrics

Free Energy: -87.99

Frequency: 0.0002

Diversity: 90.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.............(((((.......))))).....(((((((((.((((((((((((.(((.(((((..........))))).).)).........((....))))))))(((((((.(.(((.((.(....).))))).).)..((((((.(((...)))))))))...(((.......)))))))))....(((.((.....)).))).)))))).))).))))))....((((........)))).(((.(((.....))).))).)))).(((.((((((........)))...))).))).

Thermodynamic Ensemble Prediction

{((((,.....{|.{{{.{,{{|,,.,,,,))))),..,.(((((((((.((((((((((((,(((.{({((....,.,...}}))),,.,}......,..({....)))))))){{({(((.(.(((.((.(....).))))).),),.|(((((,(((...}}}}})))}...(((.......)))}}})))...,|||,||,,,,,))..,,.)))))).))).))))))}...,,,,.,,,,,..,}},.|||}|((.,..,}}}.}})||},}|{{(,{{,(((....,,},}}})}})),.},}.