Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0046000

Sequence Length

419 nt

GC Content

0.4248

GAAAAGGACCAGGGAAAAGGAGAGGUCCAACAAUCAAGAUAUCCGGAGUUCAGGUUAAUGUGAAAUCCAUUAUCCAACAUGAAGAGGAGUUUGAGAUGCUGCAUAAAUCUAUCCCUGUGGACCCUGAAGAAAAAAAAAAAUACUGCUUAACCUGUCGUGUCAAAGCUGCACAUUUUGAUGUAGAGUGGGGGGUGGAAGAUGAUUCUCGCCUGUUGCUGGGGAUUUAUGAACAUGGCUAUGGAAACUGGGAGUUAAUUAAAACAGACCCAGAGCUUAAAUUAACUGACAAAGCCAAAUUAAAGAAGCGGAAGCCUCGGGUAAAGAAGGAAAACAAAGUGCCCAGGCUGAAAGAGGAGCAUGGAAUUGAGCUUUCAUCUCCUAGGCAUUCAGAUAAUCCAUCAGAAGAGGGAGAAGUGAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.30 kcal/mol

Ensemble Metrics

Free Energy: -100.69

Frequency: 0.0000

Diversity: 113.03

Structure Visualization

Structure Prediction

MFE Structure Prediction

.........(((((....(((....))).............((((.((...(((((.(((((..(((((...(((..........)))...)).)))..))))).)))))....)).)))))))))................((((((..((.(((((((((...(((((........)))))(((((.((((((((.....))).))))).))))).........)).)))))))...))...(((((.(((......)))...))))).((((.............))))..........)))))).(((((.(((((.....(.....)....)))))))))).....(((((.((((((......))))))))))).....((((.....(((.((....)).)))....)))).

Thermodynamic Ensemble Prediction

.....({.(((((({...{{{..,{|,{,.,.,((..{{..(((,...{(((((,({(((,{...,|)}}}},||....}}}}..)))..})}.))),.}),))..,))).}))))}.)..}}}}.................((((({..{(,{(({{((({,,,{{,{{,,,,}}},))}})|||||,||||||,,.....|||{|,|||.||,||{{{{{{{..{|{,,|||,|{..,,...(((((.(((......)))...))))).((((....,...{,....}},,,........))))...(((((.(((((.....{.....)....)))))))))).....(((((.((((((......)))))))))))}}.)}}}}}...}}))).|}}}}}.)))))}},.,,,..