Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0046200

Sequence Length

576 nt

GC Content

0.4878

GAAAAGGACCAGGGAAAAGGAGAGGUCCAACAAUCAAGAUAUCCGGAGUUCAGGUUAAUGUGAAAUCCAUUAUCCAACAUGAAGAGGAGUUUGAGAUGCUGCAUAAAUCUAUCCCUGUGGACCCUGAAGAAAAAAAAAAAUUCUGCCGGUGGAGACAGAUAAAAAGCCUCAGGGGAAGCAGCUACAGACCCGAGCGGAUUACUUGUUGAAGCUGCUCAGAAAGGGUCUGGAGAAGAAGGGGGCUGUGACAGGUGGGGAAGAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-151.00 kcal/mol

Ensemble Metrics

Free Energy: -161.56

Frequency: 0.0000

Diversity: 152.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..((((((..((.....(((....)))...........(((((((..(((.((.(((((.(....)))))).))...(((.(.((((.(((((((((((..............((((...((((((.(............((((.(......).)))).......).))))))...))))...(((((((((((((....(((....))))))))).....)))))))..(((((....(((.((.((...((((......))))......)).)))))...)))))((.....))..))).)))))))).)))).).)))....(((((((.(((...(((.(((.....))).)))....((((....))))...((.((.....((((((...(((......(.(.((((.(((.((....(((...(((......))).....)))..)).))).)))).).)......))))))))).....)).)).))).)))))))......)))..))))))).))..)).))))....)((.((((((....((.....))....))).))).))

Thermodynamic Ensemble Prediction

(..{{(((({.,{.....{{{..,,)))...........{((((((..(((.((.(((((.{....}))))).))...{((.{.((((.(((((((((((,,......,,.,,.((((...((((((.(............((({,{...,,,),}},,.......},))))))...))))|..(((((((((((((.,{.(.....,)},)))))).....)))))))..|{{((,,..(((.,(.,(,..((((.....,)))}....}|||.,,)))...))))){{,....}}..}}}.}))))))).)))).}.}}}.,,.(((((((.{((...(((,(((,,..,||}.}||{{.,{{{{..,.))))...||,||.},},{{{{((...{{{......{.{.((((.(((.{{....(((...{({......))}.....)))..},.))).)))).).}......))}))))}}.....}).)).))}.)))))))......)))..))))))).)),.}},}}}}....)({.{{{{{{....{{.....))...,)))}})).,)