Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0047500

Sequence Length

405 nt

GC Content

0.4222

GCCAAAUUAAAGAAGCGGAAGCCUCGGGUAAAGAAGGAAAACAAAGUGCCCAGGCUGAAAGAGGAGCAUGGAAUUGAGCUUUCAUCUCCUAGGCAUUCAGAUAAUCCAUCAGAAGAGGGAGAAGUGAAAGAUGAUGGCUUGGAAAAAAGUCCAAUGAAAAAAAAACAGAAGAAGAAAGAGAACAAGGAGAACAAGGAGAAACAAAUGAGUUCUAGGAAAGACAAAGAAGGGGACAAGGAAAGAAAGAAGUCAAAAGAUAAGAAAGAGAAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.70 kcal/mol

Ensemble Metrics

Free Energy: -83.67

Frequency: 0.0000

Diversity: 59.00

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...............(((((.(((((.....(.....)....)))))))))).....(((((.((((((......)))))))))))((((.((((.....(((.((....)).)))....))))...((((..(((........((((...................................(((((................))))).(......)........)))).........)))..)))).................)))).....)))).((((..(((((((..((..((((...((.(((((...((((.((((.......(((((.......)))))......)))).))))))))).)).))))....))..)))))..))..)))).

Thermodynamic Ensemble Prediction

((((...............(((((.(((((.....{.....)....)))))))))).....{((((.((((((......))))))))))|((((.((({.....{((,((,...}}.}}}....)}},...||||||{(({{{.....,}))},.................................{{{{{................)))))........,........,|||..............}))...............,,,)))),....)))).{(((..{,(((((..((..{(((...{(,(((({..{((((.((((.......(((((.......)))))......)))).)))))}}}).)).}))).,..))..)))))..}}..)))}.