Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0047700

Sequence Length

684 nt

GC Content

0.4401

GCCAAAUUAAAGAAGCGGAAGCCUCGGGUAAAGAAGGAAAACAAAGUGCCCAGGCUGAAAGAGGAGCAUGGAAUUGAGCUUUCAUCUCCUAGGCAUUCAGAUAAUCCAUCAGAAGAGGGAGAAGUGAAAGAUGAUGGCUUGGAAAAAAGUCCAAUGAAAAAAAAACAGAAGAAGAAAGAGAACAAGGAGAACAAGGAGAAACAAAUGAGUUCUAGGAAAGACAAAGAAGGGGACAAGGAAAGAAAGAAGUCAAAAGAUAAGAAAGAGAAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-150.90 kcal/mol

Ensemble Metrics

Free Energy: -164.40

Frequency: 0.0000

Diversity: 152.55

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...........((((.(((((.(((((.....(.....)....)))))))))).......((((((.(((((..(((((((((((((.....(((.(((.....))).)))..))))))..)))))).....((((((((((((((((((..................................(((((................)))))...............(((((((.((..........(((....)))......((((.((((..(((((((...))))...)))..)).........))..))))....((((((..........))))))......))))))))).....((((..(((((....((((((((...(((.((..(((((((...(((.(....((.((.(..((((.......((((......(((((...............)))))....)))).......)).))..).)).))....)))).)))))))..))((..(((((....))).)).))......)))..))))))))....).).)))..))))..(((.....))).))))))))..))))))))))..)..))))).)))))).....))))...((((((.....))))))..........)))(((........)))

Thermodynamic Ensemble Prediction

(((...........(({(.(((((.(((((.....{.....)....)))))))))).......((((((.(((((..,((((((((((((...,.(((.(((.....))).))),.)))))}..)))))).....{(((((((((((((((((..................................{{{{{................)))))........,......((((((,,((..........{((....}}}......,,,..{{{,.....{|||...}}},..||||,{{{...,||...,,},}}||,,,,((((((,,........|||||,..,...}}}}|||}}..,||{{|{|{({,,{.,..{{{((({{..,{((.{{..((((((,..,{{......,,{.((((.(((.{{....(((...{({......}}}.....)))..,,.))).)))).},},,....,|,|||||.......))))..))}},)))))}}..}}{{..{{(((....))).)).)),.....}}}.,})})))}}.,,.,.},)),..}))),,||{.,...))).)))))))),.,))))))))}..}..))))).)))))).....||}}...|||{{{.....})))))..........)))(((........)))