Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0049200

Sequence Length

602 nt

GC Content

0.4834

GAUGAUGGCUUGGAAAAAAGUCCAAUGAAAAAAAAACAGAAGAAGAAAGAGAACAAGGAGAACAAGGAGAAACAAAUGAGUUCUAGGAAAGACAAAGAAGGGGACAAGGAAAGAAAGAAGUCAAAAGAUAAGAAAGAGAAGGAGCAAAAGAAGAAAGACGACGUGACUGGGGGUAAGAAACCAUUUCGUCCAGAGGCCUCAGGCUCCAGCCGGGACUCUCUGAUAUCUCAGUCCCAUACCUCACACAACCUUCACCCUCAGAAGCCUCAUUUGCCUGCCUCCCAUGGCCCACAGAUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAGAUCGAGGAGACUGGCAGAGGGAAAGAAAGUUCAACUAUGGUGGUGGCAACAACAAUCCACCAUGGGGAAGCGACAGGCACCAUCAGUAUGAGCAGCACUGGUACAAGGACCACCAUUAUGGGGACCGGCGACAUAUGGAUGCCCACCGUUCCGGAAGCUAUCGACCCAACAACAUGUCCAGAAAGAGGCCUUAUGACCAGUACAGCAGUGACCGAGACCACCGGGGACACAGAGAUUAUUAUGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-116.50 kcal/mol

Ensemble Metrics

Free Energy: -131.84

Frequency: 0.0000

Diversity: 177.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((.(((((......))))).............((((......(((.......(((((................)))))................(((((..(((.........(((....)))..............................((((.((.(((..........))))).))))(((((((((..(((....)))))).).)))))...)))..)))))....))).......)))).(((((((...((((((((((..(((......)))...........(((....)))...(((.......)))..........(((....)))......)))))).))))...))....)))))........(((..(((((((((((.......))..))))))))).)))((.....)).))))))...((.((.(.((((((..((((.((.......((((.(((((.(((...(((....)))..)))))))....................).))))......))))))...)))))).).)).((..(((.......)))..))................)).

Thermodynamic Ensemble Prediction

,.((((((((((((......)))},.........................,..,..,,{(,,{..{,.....,,,,{,,|||||,{,.........,,,,(((({..{(,.........(((....}}}........,..,,,,,.............,(({(.{,.(((..........)))}},)))){{{{{{|{||.{||,,,.}))|}),|,})))}...}}),.)))))....}},......}))}|.{|||{||,,.{||||||||{,|{{|,,|,,,|||.........|,|||....}},.,.{,,.......,}}..........{,,....}}}.,,...||||}|,}}}}.,,)),,,.}})))...,...||||..(((((((((((.......},..))))))))){{|,(({...{||{||||,,{{{(,{(,.,.,||{||}},,((.((.((,...}))}}.||{,.,.|..,|||.}}}),..}))))),}.,}}},}}}.}|........|||||.......}|}}},.,,,)),}}.,.}}.(({.(((.,.....))),,})},........,,.,..,,,