Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0049300

Sequence Length

486 nt

GC Content

0.4486

AAACAAAUGAGUUCUAGGAAAGACAAAGAAGGGGACAAGGAAAGAAAGAAGUCAAAAGAUAAGAAAGAGAAGCCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.77 kcal/mol

Ensemble Metrics

Free Energy: -110.18

Frequency: 0.0000

Diversity: 169.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......(((.((((...............................)))).))).................((((.......((((.((((..((((.(((((.....(((.(..(((.((((((.((((..(((.(((((((.(((...(((.(((.....))).)))....((((....))))...((.((.....((((((...(((......(.(.((((.(((.((....(((...(((......))).....)))..)).))).)))).).)......))))))))).....)).)).))).)))))))..)))..).))).))))..)))))..))))......))))).......(((((..(((((.((((.(((.....))).((((........))))......)))).))))))))))...((((.....))))....))))))))))))......))))(((........)))

Thermodynamic Ensemble Prediction

,......,,,{((((................,,|||..............{||....,,,......,.,..{(({.......((((.((({..{{(({((((,..{{,{,,,{,{(((,.,(((((,(((,..,..,,(((((..,,...|||}|{,....|)}}.}))}|,,||,|,.,,||||{{.{,,{{,{{,,{(((((,..{{{......,,{.((((.(((.{{....(((...{({......}}}.....)))..,,.))).)))).}.}.,....,}|}||||.......)}))..)),}})))))},..}}||.,|||||,,..))),)},}}},....||}.}}}|||,,..(({{,..||{{{.({({.{{{.,,..||}.{||{....,,,,)))}.}}},.}})}.)))))))))),,.((((.....)))).....}}}))))))))......}))){||........)))