Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0049400

Sequence Length

414 nt

GC Content

0.4662

CCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.10 kcal/mol

Ensemble Metrics

Free Energy: -106.89

Frequency: 0.0000

Diversity: 136.65

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.......((((.((((..((((.(((((.....(((.(..(((.((((((.((((..(((.(((((((.(((...(((.(((.....))).)))....((((....))))...((.((.....((((((...(((......(.(.((((.(((.((....(((...(((......))).....)))..)).))).)))).).)......))))))))).....)).)).))).)))))))..)))..).))).))))..)))))..))))......))))).......(((((..(((((.((((.(((.....))).((((........))))......)))).))))))))))...((((.....))))....))))))))))))......))).(((........)))

Thermodynamic Ensemble Prediction

(((.......((((.((((..(((({((((,..{{{{{,,{,{(((,.,(((((.((({..,..,,(((((...,...|||}|,.....}))).)))}}.,,|,|,.,|||||{{,{,,((,{{|,{(((((,..{{{......,,{.((((.(((.{{....(((...{{{......}}}.....}))..,,.))).)))).},},,....,}||||||.......)}))..}}}}})))))},..}}||.,||{||....))),)},}},,....||}.|}}|||,,..(({{,..||{{{.|||{.||{.,|..||}.{||{....,,,,)))}.}}},.}})}.))))))))))},.((((.....)))).....}}}))))))))......))).(((........)))