Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0049500

Sequence Length

628 nt

GC Content

0.4841

CCUAAAAGUGGUGAUGCCAAAUCUUCGAGUAAAUCAAAGCGAUCUCAGGGUCCUGUCCAUAUUACAGCAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAGGAGCAAAAGAAGAAAGACGACGUGACUGGGGGUAAGAAACCAUUUCGUCCAGAGGCCUCAGGCUCCAGCCGGGACUCUCUGAUAUCUCAGUCCCAUACCUCACACAACCUUCACCCUCAGAAGCCUCAUUUGCCUGCCUCCCAUGGCCCACAGAUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-147.20 kcal/mol

Ensemble Metrics

Free Energy: -159.67

Frequency: 0.0000

Diversity: 195.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((......((((((.....(((((.((.....))...((..(((.((((((((.((((.......(((((.......)))))......)))).))).((((((((.......((((...((((..(((((((...(((.(....((.((.(..((((.......((((......(((((...............)))))....)))).......)).))..).)).))....)))).))))))).((((((((((((..(((((((.(((((...((((..((..((...((((.(((((((((.(((((((((((((...)).))))).)))))))))))....((((((.(((.........)))))))))......))))))))))..))..))))(((........)))..................((((.((.(((..........))))).))))..)))))))).))))....))))...)))))))).)))).))))))).)))))..........))))).))).))..((((((...(((......)))...))))))..(((....))).))))).......))))))........))...((.((....)).))

Thermodynamic Ensemble Prediction

.({....{.((((((,.....,{{,.{{.....}}..,{..{((((.(((({{(,((((,......(((((.......))))|,,....}))).))),|{{((,{{,,{,,,,(({(,.,((({..{{{{(((..,{,.,{,.,,{(.((((,{{{,((....{((,,{(({....{{||,.....|||.....))),}},,.}},}}.....|||((((.......))))..}))},)))))},.((((((((((((..(((((((.(((((...{(((..((...,...((((.{(((((({(,(({(({{{(({{{..,||,}}}}}.,}))))}})}}.,,,|,||||||||,,.....,,)}}},}))}......}))))))}....},..}}}|(((........))),..,..............(({(.{{.{{{..........)))}},))))..)))))))).))))....))))...)))))))).}})),))}))}}.}}))),.....||||,.}}},.},,}},}||||||,.,|{|.....,))}...}))))),}}}},,}}))..)))))..,,...)))))).......,,}...{{.{{....}).})