Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0050100

Sequence Length

378 nt

GC Content

0.4762

CAGGAAGUGAACCUGUCCCCAUUGGAGAGGAUGAGGAUGAUGAUCUGGACCAGGAGACAUUCAGCAUAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAGGAGCAAAAGAAGAAAGACGACGUGACUGGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.20 kcal/mol

Ensemble Metrics

Free Energy: -89.41

Frequency: 0.0000

Diversity: 115.75

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.......))))((((..((((...((((.(......).))))...))))..((..(((((((...(((.(....((.((.(..((((.......((((......(((((...............)))))....)))).......)).))..).)).))....)))).)))))))..)).((((((....((((((((((......))..)))).......(((((..(((((.((((.(((.....))).((((........))))......)))).))))))))))...((((.....)))).........))))..........)))))).........((..((.................))..))))))

Thermodynamic Ensemble Prediction

((((.......)))){((({,{({(.,.(({(,(,,....}.||||,,.}}},{.{,..(((((((...{{..,...,,{.((((.(((.(,....(((...{({......}},.....)))..,,.))),)))).},},,.....|,|{(((.......))))..})}}.)))))))..}}.{{{{||||,,..|}|{||{|},,...})}},))).......((((,,{(((((,({((,(({,{{{{||,.,||{,,,,,..,)))),}}},.}}}}.|||}}|||}}...,,{{,,,,.)))}......,}}))))}.........}}}|||........,||..{|.................}}..})))))