Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0051000

Sequence Length

493 nt

GC Content

0.4888

UGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAGGAGCAAAAGAAGAAAGACGACGUGACUGGGGGUAAGAAACCAUUUCGUCCAGAGGCCUCAGGCUCCAGCCGGGACUCUCUGAUAUCUCAGUCCCAUACCUCACACAACCUUCACCCUCAGAAGCCUCAUUUGCCUGCCUCCCAUGGCCCACAGAUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-112.30 kcal/mol

Ensemble Metrics

Free Energy: -121.45

Frequency: 0.0000

Diversity: 116.36

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.....((((.(((((...((((...((((((((.....((.((.....(((......))).....)).)).....)))((((.......))))...)))))(((((..((((((((((((..(((((((.(((((...((((..((..((...((((.(((((((((.(((((((((((((...)).))))).)))))))))))....((((((.(((.........)))))))))......))))))))))..))..))))(((........)))..................((((.((.(((..........))))).))))..)))))))).))))....))))...))))))))...)))))........)))).....))))).))))........((((((...(((......)))...))))))..(((....)))...(((.......))).............)))((.((....)).))

Thermodynamic Ensemble Prediction

(((..,{.((((.(((((...((((...,(({((((,...,((.({.....(((....,}))},,...}}.)).....|||((((.......))))...}))}}||||{..((((((((((((..(((((((.(((((...((((..((...,...((((.{(((((({(,(({(({{{(({{{..,||,}}}}}.,}))))}})}}.,,,|,||||||||,,.....,,)}}},}))}......}))))))}....},..}}}|(((........))),..,..............(({(.{{.{{{..........)))}},))))..)))))))).))))....))))...))))))))...))))).,,.....))))....,))))).)))).....,|,((((((...(((......)))...))))))..{((....))}.,.{,,.......,}}.............)))((.((....)).))