Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0051100

Sequence Length

740 nt

GC Content

0.5014

UGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAGGAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAGGAGCAAAAGAAGAAAGACGACGUGACUGGGGGUAAGAAACCAUUUCGUCCAGAGGCCUCAGGCUCCAGCCGGGACUCUCUGAUAUCUCAGUCCCAUACCUCACACAACCUUCACCCUCAGAAGCCUCAUUUGCCUGCCUCCCAUGGCCCACAGAUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAGAUCGAGGAGACUGGCAGAGGGAAAGAAAGUUCAACUAUGGUGGUGGCAACAACAAUCCACCAUGGGGAAGCGACAGGCACCAUCAGUAUGAGCAGCACUGGUACAAGGACCACCAUUAUGGGGACCGGCGACAUAUGGAUGCCCACCGUUCCGGAAGCUAUCGACCCAACAACAUGUCCAGAAAGAGGCCUUAUGACCAGUACAGCAGUGACCGAGACCACCGGGGACACAGAGAUUAUUAUGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-173.60 kcal/mol

Ensemble Metrics

Free Energy: -190.24

Frequency: 0.0000

Diversity: 232.50

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(..((.(((..(((((((..((...((((((((......((.((.....(((......))).....)).)).....(((((((.......))))..))).((.((((...))))))..(((....)))))))))))...((((..((..((...((((.(((((((((.(((((((((((((...)).))))).)))))))))))....((((((.(((.........)))))))))......))))))))))..))..))))(((........)))..................((((.((.(((..........))))).))))))..)))))))..)))...)).).)((.(((((((((((.(((((....(((.(((..(((((....((((...((((((((((..(((......)))...........(((....)))...(((.......)))..........(((....)))......)))))).))))...))))..))))).......(((((....((((((((.(........((((...)))).........).))))))))...))))).((((((((..((((.((.......((((.(((((.(((...(((....)))..)))))))....................).))))......))))))...))))))...)).)))...))).......)))))...)))).))))).)).))

Thermodynamic Ensemble Prediction

(,(..((.({(..(((((((,.((...,(((((((,.....{{||,.....{{{....,}))}}}...,}.||.....{{{((((.......))))..}}},|||{{{,..,||||||,{(((..,{|||||}|||||...{(({..{(...,...((((.{(((((({(,(({(({{{(({{{..,||,,}}}}.,}))))}}))}.,,,|,||||||||,,.....,,)}}},}))}......}))))))}....},..,}}}(((........))),..,.............,(({(.{{.(((..........)))}},)))))},,))))))},,))}...)),).}{|,||||||{{{{{.{((({....||{,||{..,{(({.((((({(...((((((((((.,(((......}}}.........,.|||....,,,.,.{,,.......,}}..........{,{....,}}.,,...)))))).))))...))},..)))))...},..{{((,.({{((((((((.,.....,..,||}}}})))||..{{....}})}}}}|}},,.})}||.(,((((((.,((((.((.{{....|||{,,((((.{,{...{{{.,..))}.,)}))))}...,..,,..,..........})},.....,.)))))}.,,)))))).,.)).|||.,,|,}.....,,)))))...)))},,}))}.)).})