Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0051600

Sequence Length

439 nt

GC Content

0.4738

GAACCUAUGGAUUUUUGUUUCCAAGUUUACAGAAUUUGAUGCUCGAAAACUGCAUAAGUUAUACAAGAUGGCUCAUAAGAAAAGGUCUCAAGAAGAAGAGGAGCAAAAGAAGAAAGACGACGUGACUGGGGAUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAGAUCGAGGAGACUGGCAGAGGGAAAGAAAGUUCAACUAUGGUGGUGGCAACAACAAUCCACCAUGGGGAAGCGACAGGCACCAUCAGUAUGAGCAGCACUGGUACAAGGACCACCAUUAUGGGGACCGGCGACAUAUGGAUGCCCACCGUUCCGGAAGCUAUCGACCCAACAACAUGUCCAGAAAGAGGCCUUAUGACCAGUACAGCAGUGACCGAGACCACCGGGGACACAGAGAUUAUUAUGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.30 kcal/mol

Ensemble Metrics

Free Energy: -100.06

Frequency: 0.0000

Diversity: 110.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((...)).)))(((((..(((((((...))))))).(.(((((...((((((.((((((.....))))))........((((((((.........((..((.................))..))((((.((..((...................))..)))))).....))))).))).....)))))).))))).).(((((((.((((........(((..(((((((((((.......))..))))))))).)))((.....)).......((((.((.....)).))))..((((........((((..((((.(((...(((....)))..)))))))..........)))).......)))).........)))).)).)))))......((..(((.......)))..))..............)))))

Thermodynamic Ensemble Prediction

....{,,.,(((((((((.(((((((({...})))))}.,.((((,..{((((,,.,{{{,{.....,|||,|{{{,.....{((((((.........,,..,{.............,,,,||{.,(((((.{{..(((....))}.,.,..........,),))))}....||},,.}})}....,|||||.||,,}..}|||{|||..(((...((.{{({{..((((((((({(.......},..)))))))))(({{{((...((((((((..((((.((.....)).))))..((.((.(({...})))).)).....,..)))).))))...)))))).}.,})}.))..))).....,,}))),.....}}))))))}))})))}}...}}}|}..,||}}.,,..,})))).)))))))))..,,.)....