Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0052100

Sequence Length

308 nt

GC Content

0.5097

AUGCAUGGACACCCAAGAGAUAACUACAAUCACCCCAACAAGAGACACUUCAGUAAUGCAGAUCGAGGAGACUGGCAGAGGGAAAGAAAGUUCAACUAUGGUGGUGGCAACAACAAUCCACCAUGGGGAAGCGACAGGCACCAUCAGUAUGAGCAGCACUGGUACAAGGACCACCAUUAUGGGGACCGGCGACAUAUGGAUGCCCACCGUUCCGGAAGCUAUCGACCCAACAACAUGUCCAGAAAGAGGCCUUAUGACCAGUACAGCAGUGACCGAGACCACCGGGGACACAGAGAUUAUUAUGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-55.40 kcal/mol

Ensemble Metrics

Free Energy: -64.83

Frequency: 0.0000

Diversity: 102.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((....)))...(((((((.......((((...........((((.((....(((.((.....))))))).))))........(((((....((((((((.(........((((...)))).........).))))))))...))))).((((((((..((((.((.......((((.(((((.(((...(((....)))..)))))))....................).))))......))))))...))))))...)).(((........))).))))......)).))))).......

Thermodynamic Ensemble Prediction

.,,{.(((....))}.,.{{{.......,,,.{(((.....,.,...{|||.,,..{{({{.((.....)}}}||}}..|||...,...{{{{..(((((((((((.......},..)))))))))||,,{{,...|||||||||,{{{|||{|.,.{||{{{,,,{((.((.({,...|||||.||{{.,,{...|||.}}}),,.})))))}}...},.,}..|,,.......,}}}}.......}})))}.}}}))))).,.}}.(({.{{,....,.,,))},.}.,.....,,,}}.,,....