Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD7_0004200

Sequence Length

431 nt

GC Content

0.4455

CAUUCCCCGUCGGAGCCCUUUCUAGAGAAACCAGUGCCGGAUAUGACUCAGGUUAGUGGACCGAAUGCUCAGCUAGUGAAGAGUGAUGAUUACCUGCCAUCAAUAGAACAGCAGCCACAACAAAAGAAGAAGAAAAAGAAAAACAACCACAUUGUAGCAGAGGAUCCCAGUAAAGGUUUUGGUAAAGAUGACUUCCCUGGUGGGGUAGAUAACCAAGAACUAAAUAGGAACUCACUGGAUGGGUCCCAAGAAGAAAAAAAGAAAAAGAAAAGGUCAAAGGCAAAAAAAGACCCGAAGGAACCGAAAGAACCCAAGGAGAAAAAAGAGCCCAAGGAACCCAAGACCCCGAAAGCCCCUAAGAUUCCCAAAGAGCCAAAGGAAAAGAAAGCAAAAACUGCCACGCCAAAACCCAAAUCCAGCAAAAAGUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-59.10 kcal/mol

Ensemble Metrics

Free Energy: -68.25

Frequency: 0.0000

Diversity: 121.20

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((.....))))..(((......((......(((.((((.((.......(((.(((.((...((((..(((.((......(((((.........))))).....)))))..............................((((.....))))))))..))...))).))).(((((((((.........((((.(((((((((....................((.(((((.....))))).))........................((((...(((..........((...((...........))...))..........)))...((...))..))))......)))))...............))))..))))......(((.....)))...))))))))))).)))).))).....)))))

Thermodynamic Ensemble Prediction

{{((({....,||}|,.,({,{..,.}},.....{((,{({{.{{.,...,}|||.||||||},,||((..(((.((,.....(((((.........))))).....,}})),||.,,........................,,,......}))),)),,,|}.|||,,.,...(((((((((.....,,.,{{(({,,,,||||{.....}}},,,,.}}...,.}}}.|}}.{{((,(((((.{,........................((((...,,,.......}}}|{...{{...,.......,},..||..........,}}...|}.,})},...}},,....},.|||..,.{{{,....,,},,..,)),.......(((.....)))...}}}}}}))))}.}))),)},....,}..))