Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD7_0011900

Sequence Length

400 nt

GC Content

0.4125

GAACACAAAGUGCUGCUGACGGGAACCCCACUCCAGAACACUGUGGAAGAACUCUUCAGCUUGCUUCAUUUCUUGGAACCAAGUCGCUUCCCUUCAGAAACCACAUUUAUGCAAGAAUUUGGUGAUCUAAAAACAGAAGAGCAGGUGCAAAAACUUCAAGCUAUUCUAAAGCCAAUGAUGUUGAGACGUCUCAAAGAGGAUGUAGAAAAGAACUUGGCCCCCAAAGAAGAAACUAUUAUUGAAGUUGAGCUAACAAACAUUCAGAAGAAAUAUUACCGAGCCAUCCUUGAGAAGAAUUUCACAUUUCUUUCCAAAGGCGGUGGUCAAGCUAACGUACCUAACCUAUUAAACACUAUGAUGGAAUUGCGGAAGUGCUGCAAUCAUCCGUACCUUAUCAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.70 kcal/mol

Ensemble Metrics

Free Energy: -86.95

Frequency: 0.0000

Diversity: 98.07

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((..((.(((..(..(((...))).)..))).))..))))((((....)))).(((((.(((........))).))))).(((...(((((((.((((.((((......)))).))))..))).......)))))))((((((...(((.(((.(((.......)))...))).)))...((((((......)))))).........(((((((.((.................(((((((.........))).))))................(((....(((.((((((........)))))).))).))))).))))))).....))))))...((((((.......)))))).(((((((.....)))))))..))(((.........)))

Thermodynamic Ensemble Prediction

(..((({..(({{((,,(,.(((...))).,..))).,),,))))((((....))))(((((((((((((((((((..(((((((,,(((.{((,(((.((((.((((......)))).))))..)))......{|||,{(({(((......}}}}...}||.}}}}...,|,..,,,.}|||.,{{{{||,.....)))})).}}}..).})))))..,)},}}))))..........)))))},}))))........,{{....)},....,{{{,.{{{,,(((((.((((((........)))))).)})})),)))))),..|,....},.......,,,,,........,}{{({{(((((((.....)))))))..))})}.}{......,,)