Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0002800

Sequence Length

250 nt

GC Content

0.3480

GAGCUGAUUCACAUGCAGGAGUUAGAUAUAUUACAGAGGCCCUCAUUAAAAAACUUACUAAACAGGAUAAUUUGGCUUUGAUAAAAUCUCUGAACCUUUCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAUUGGUCACCAGCACCUCUGCAGAUUCAGCGUCAUCACCCAGUCUGUCUCAGCUGGAGUCUUCCCUCACAGAGGACUCUCAACUUGGACAAAAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-38.20 kcal/mol

Ensemble Metrics

Free Energy: -42.51

Frequency: 0.0009

Diversity: 24.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((...((((((..(((((.((.(((..((((((...((((...................))))..))))))..))).)).))))).........................................................((..((((...))))..)))))))))).))))).))...........(((((.((.((((((((((.......)))))))).)).)).))))).......

Thermodynamic Ensemble Prediction

({(((((.((...((((((.{(((((.((.(((..((((((...{{{{.....,,........,}..}}}}..))))))..))).)).))))).........................................................((..{(((...))))..))}))))))).))))).}|...........(((((.((.((((((((((.......)))))))).)).)).)))))......}