Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0005700

Sequence Length

343 nt

GC Content

0.3848

CUAAAACAGAAGACCAUAGAAUUAACACGAGCAUGUCAGAAGCAAUAUGAGCUGGAACAGGAAUUGGCCUUUUAUAAAAUUGAUGCUAAAUUUGAGCCACUAAAUUAUUAUCCAUCAGAGUAUGCUGAAAUUGAUAAAGCCCCAGAUGAAAGCCCUUACAUUGGCAAAUCCAGAUACAAGAGAAAUAUGUUUGCCACAGAGAGUUAUAUUAUUGACAGUGCUCAGGCAGUACAGAUCAAGAAGAUGGAGCCAGAUGAACAACUUAGAAAUGAUCACAUGAACUUGAGAGGCCACACACCACUGGACACGCAACUGGAAGACAAAGAAAAAAAAAUAAGUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.60 kcal/mol

Ensemble Metrics

Free Energy: -52.33

Frequency: 0.0000

Diversity: 99.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.....(((................((.(..(((((........)))))..))).....((...((((((((((....((((((......((((((.......(((....((((((........(((..((((....((((...(((((.(((.(((....((((((((...................))))))))..))).)))...)))))....).)))....)))).)))........))))))....)))......))))))....)))).)).....))))))))))....)).))).....)(.(((......................)))...)

Thermodynamic Ensemble Prediction

({............................,(,{{{,.....,..,,}},)||{...{,({...((((((((((.....,(({({{{...((((((...,,...{{,{{{{{,,(({(......}}}}...}}}}}}.|,..,.|||,..,||..,|.|,,((((,,{({{{..,.,..,.......{|||||||,..|||.((((......)))).,},))}.))))),))),.||....,,,)))),,,,,,},.....}}},,,..,})))}.}}.....))))))))))....}}.}||..,..||..{{,.....................,)),),}