Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0006000

Sequence Length

333 nt

GC Content

0.3814

UAUGCUGAAAUUGAUAAAGCCCCAGAUGAAAGCCCUUACAUUGGCAAAUCCAGAUACAAGAGAAAUAUGUUUGCCACAGAGAGUUAUAUUAUUGACAGUGCUCAGGCAGUACAGAUCAAGAAGAUGGAGCCAGAUGAACAACUUAGAAAUGAUCACAUGAACUUGAGAGGCCACACACCACUGGACACGCAACUGGAAGACAAAGAAAAAAAAAUAAGUGCAGCACAAACUCGACUAUCAGAACUGCAUGAUGAAAUAGAAAAGGCAGAACAACAAAUUUUGAGAGCUACUGAAGAAUUUAAACAACUGGAAGAAGCUAUACAACUAAAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.70 kcal/mol

Ensemble Metrics

Free Energy: -45.09

Frequency: 0.0000

Diversity: 92.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((...........))).((((.((...((((((((((((((...((((.......((......((((((((..(((..((((......))))..).))..))))).)))..)).......)))))))).)))............(((....))).....)))).)))....))...))))....(((.((......................)))))........(((((.........((((.................))))...........)))))((((.((..((...........))...)).)))))))(..........)

Thermodynamic Ensemble Prediction

({((((............||.((((.((...((({{{,{{{((((...((((..,.,..{{......((((((((..,({,.((((......))))..|.)),.))))).)))..}}..,.,..)))})))},.|}......,,.....||.}}.}}}...,,)))).})}....,,...})))....,|,.|||.....................,||||||,.....,|,...,,{{,,..||||.},,}...........,))}}.......,.||||,||,{{{.||..||,.,,.......}),,.,,.))),})}{..........)