Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0006700

Sequence Length

747 nt

GC Content

0.4552

AUUUCAGAAGCAGGGAAAGACCUUCUUUACAAGCAGUUGAGUGGUAGACUACAACUUGUAAAUAAAUUACGCCAGGAAGCUCUGGAUCUAGAACUGCAGAUGGAAAAGCAAAAGCAGGAAAUUGCCGGAAAGCAGAAGGAGAUUAAGGACCUGCAAAUAGCCAUAGAUAGCCUGGAUUCCAAAGACCCAAAACAUUCCCAUAUGAAGGCUCAAAAGAGCGGUAAAGAACAACAGCUUGACAUUAUGAACAAGCAGUACCAACAACUUGAAAGUCGUUUGGAUGAGAUACUUUCUAGAAUUGCUAAGGAAACGGAAGAGAUUAAGGACCUUGAAGAACAGCUUACUGAAGGCCAGAUAGCAGCAAAUGAAGCCCUGAAGAAGGAUUUAGAAGGUGUUAUCAGUGGGUUGCAAGAAUACCUGGGGACCAUUAAAGGCCAGGCAACUCAGGCCCAGAAUGAGUGCAGGAAGCUGCGGGAUGAGAAAGAGACAUUGUUGCAGAGAUUGACAGAAGUCGAGCAGGAGAGAGACCAGCUGGAAAUAGUUGCCAUGGAUGCAGAAAAUAUGAGGAAGGAGCUUGCAGAGCUAGAAAGUGCCCUCCAAGAGCAGCAUGAGGUGAAUGCAUCUUUGCAGCAGACCCAGGGAGAUCUCAGUGCCUAUGAAGCUGAGCUAGAGGCUCGGCUAAACCUAAGGGAUGCUGAAGCCAACCAGCUCAAGGAAGAGUUGGAAAAAGUAACAAGACUUACCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-182.80 kcal/mol

Ensemble Metrics

Free Energy: -198.01

Frequency: 0.0000

Diversity: 196.64

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.((((.(((......))).))))......((((((((.....))).)))))(((((.....)))))(((((....(((((........((((...((......))...)))).......)))))..((((...............))))................)))))((((....((((((...(((......)))...((((....))))((((..........(((((..........)))))..)))).....((.((((((.((((.....)))))))))).))((((.((..(....)...)).))))..((.((((......(((....))))))))).(((((((.(...((((..(((.....))).))))...).)))))))..))))))....)))).((((((.((((((...((((((....))..))))...)))).))((((....))))..................((((((((((((.........((.(((.((.......)).))).))......((((.((((.(((................(((((...)))))......)))..)))).).)))((((.......))))))))))))))))..)))))))))))((((((((((....(((((((((...)))))))))........))).))))))......(((((((......)))))))...((((......)))).....)

Thermodynamic Ensemble Prediction

(((((.{{{(,(((......}}|,||||,,,.,.((((((((.....))).)))))}||||.....,,,,.(((((...,{||||..,,....((((...((......)}...))||....,{,||,,...}}||.,}}.,.,,.....})))).....,||,,,|....}}}}}((((....((((((...{,(,,....,,}...((((....)))),{{........,{.(((((..........))))).}},||,,{.{((.,,,|||.||||}}.,,||||||||||{||,.,{,{{{,{{...{..,,....}}..|{.||||,.......{{|,.||{}}}}}).|{{|||{,(...{{{{..(((.....))).)))),,,),))))})),.))))))....)))}.((((((.{(((((...((((,(....}},.))))...)))).}}((((....)))),...,..........,.|(((((((((((({(((....}||,{((.{{.......}|,|||,,...,,||||{{.{{,,,||,..........{{,.{{.((((...,.||....,,,),)},))),.,.,},{(({.......}))))))))))))))),.)))))))})))((((((|{{{.,{.(((((((((...)))))))))...,,...))).}))))}......(((((((......)))))))...{{((......}))).,..,)