Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0006800

Sequence Length

570 nt

GC Content

0.4386

AUUUCAGAAGCAGGGAAAGACCUUCUUUACAAGCAGUUGAGUGGUAGACUACAACUUGUAAAUAAAUUACGCCAGGAAGCUCUGGAUCUAGAACUGCAGAUGGAAAAGCAAAAGCAGGAAAUUGCCGGAAAGCAGAAGGAGAUUAAGGACCUGCAAAUAGCCAUAGAUAGCCUGGAUUCCAAAGACCCAAAACAUUCCCAUAUGAAGGCUCAAAAGAGCGGUAAAGAACAACAGCUUGACAUUAUGAACAAGCAGUACCAACAACUUGAAAGUCGUUUGGAUGAGAUACUUUCUAGAAUUGCUAAGGAAACGGAAGAGAUUAAGGACCUUGAAGAACAGCUUACUGAAGGCCAGAUAGCAGCAAAUGAAGCCCUGAAGAAGGAUUUAGAAGGUGUUAUCAGUGGGUUGCAAGAAUACCUGGGGACCAUUAAAGGCCAGGCAACUCAGGCCCAGAAUGAGUGCAGGAAGCUGCGGGAUGAGAAAGAGACAUUGUUGCAGAGAUUGACAGAAGUCGAGCAGGAGAGAGACCAGCUGGAAAUAGUUGCCAUGGAUGCAGAAAAUAUGAGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-120.30 kcal/mol

Ensemble Metrics

Free Energy: -132.68

Frequency: 0.0000

Diversity: 186.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((.(((......))).))))......((((((((.....))).)))))(((((.....)))))(((((....(((((........((((...((......))...)))).......)))))..((((...............))))................)))))..(((((((((.(((..(((......)))...((((....))))((((..........(((((..........)))))..))))......)))...))).)))))))))))).((((((........(((((...(..((....))..)..))))).......((((((((..((((.(((((((.(...((((..(((.....))).))))...).)))))))..((((((((........((((...((......)))))))))))))))))))))..)))))((((....))))(.((((.........)))).)((((.....((.(((...((.(((.((.......)).))).)).....))).))....)))).........))))))

Thermodynamic Ensemble Prediction

.,((({{{{(.(((......))),)}||,,..,,((((((((.....))).)))))}||||.....,,,},(((({...,||||},,,,....((((..,((,.....|,...||||,..,{{,{|.....}},,..}}.,,},.....|||||.....,||.......,{{|{{{{((,...((({({...{,(,,....,,}...((((....)))){{{........,{.(((((..........))))).}),||,,,.,({.{,,|||.||||}}.,,||||||||||{||,.,{,{{{{({...{..,,....}}..|,.||||,.......{{{,.||{,,}}}).{{{{{|{.(...{{{{..(((.....))).)))),,,),))))})),.})))))....}}}}.|||||,,.{{,,....}}||}|||,{||||}}}|,.,..}},}}{|{|....|||||,{{{{.........}}}|.||||},...((({(....)))}}||}|,.......,|{||||,...})))))}},}},.}})}}......})})},..