Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0007700

Sequence Length

375 nt

GC Content

0.4480

UCCCAUAUGAAGGCUCAAAAGAGCGGUAAAGAACAACAGCUUGACAUUAUGAACAAGCAGUACCAACAACUUGAAAGUCGUUUGGAUGAGAUACUUUCUAGAAUUGCUAAGGAAACGGAAGAGAUUAAGGACCUUGAAGAACAGCUUACUGAAGGCCAGAUAGCAGCAAAUGAAGCCCUGAAGAAGGAUUUAGAAGGUGUUAUCAGUGGGUUGCAAGAAUACCUGGGGACCAUUAAAGGCCAGGCAACUCAGGCCCAGAAUGAGUGCAGGAAGCUGCGGGAUGAGAAAGAGACAUUGUUGCAGAGAUUGACAGAAGUCGAGCAGGAGAGAGACCAGCUGGAAAUAGUUGCCAUGGAUGCAGAAAAUAUGAGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.40 kcal/mol

Ensemble Metrics

Free Energy: -87.52

Frequency: 0.0000

Diversity: 99.62

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((........((((....))))((((..........(((((..........)))))..)))).....((.((((((.((((.....)))))))))).))......(((((...(..((....))..)..))))).......((((((((..((((.(((((((.(...((((..(((.....))).))))...).)))))))..((((((((........((((...((......)))))))))))))))))))))..)))))((((....))))))))(...............(((((.....((.(((...((.(((.((.......)).))).)).....))).))....))))).............)

Thermodynamic Ensemble Prediction

.(((((((....((((....)))){{{........,{.(((((..........))))).}}}||..,.,((.((((((.((((.....)))})))))).}}..,|,,(((((...(..{{....}}..}..))))}.....,,(((({(((..{{{{.(((((((.(...((((..(((.....))).))))...).))))))).,{((((({{.......{((({...{(......}}))}})}}}}}}}))))}}}..})}}}((((....))))|,||{,.........,,||.|{(({...,{((,(,,..,||.{{{.{{.......)),})),}}...,}))),},}...}))},...))))).))...