Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0007800

Sequence Length

687 nt

GC Content

0.4643

UCCCAUAUGAAGGCUCAAAAGAGCGGUAAAGAACAACAGCUUGACAUUAUGAACAAGCAGUACCAACAACUUGAAAGUCGUUUGGAUGAGAUACUUUCUAGAAUUGCUAAGGAAACGGAAGAGAUUAAGGACCUUGAAGAACAGCUUACUGAAGGCCAGAUAGCAGCAAAUGAAGCCCUGAAGAAGGAUUUAGAAGGUGUUAUCAGUGGGUUGCAAGAAUACCUGGGGACCAUUAAAGGCCAGGCAACUCAGGCCCAGAAUGAGUGCAGGAAGCUGCGGGAUGAGAAAGAGACAUUGUUGCAGAGAUUGACAGAAGUCGAGCAGGAGAGAGACCAGCUGGAAAUAGUUGCCAUGGAUGCAGAAAAUAUGAGGAAGGAGCUUGCAGAGCUAGAAAGUGCCCUCCAAGAGCAGCAUGAGGUGAAUGCAUCUUUGCAGCAGACCCAGGGAGAUCUCAGUGCCUAUGAAGCUGAGCUAGAGGCUCGGCUAAACCUAAGGGAUGCUGAAGCCAACCAGCUCAAGGAAGAGUUGGAAAAAGUAACAAGACUUACCCAGUUAGAACAAUCAGCCCUUCAAGCAGAACUUGAGAAGGAAAGGCAAGCCCUCAAGAAUGCCCUUGGAAAAGCCCAGUUCUCAGAAGAAAAGGAGCAAGAGAACAGUGAGCUCCAUGCAAAACUUAAACACUUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-175.30 kcal/mol

Ensemble Metrics

Free Energy: -189.40

Frequency: 0.0000

Diversity: 181.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((......((((....))))((((..........(((((..........)))))..)))).....((.((((((.((((.....)))))))))).))((((.((..(....)...)).))))..((.((((......(((....))))))))).(((((((.(...((((..(((.....))).))))...).))))))).)))))(((((((....(((((...((......)))))))...((((..(((.........((((....))))))).)))).......(((..(((((.....((.(((...((.(((.((.......)).))).)).....))).))....))))).....))).(.(.(((((((((...((........))..((((((.(((.(.(((((.(..(((..((((.(((((..((..(((.....(((.......)))(((((((((...)))))))))...)))..))..))))).......(((((((......)))))))...((((......)))).....(((.((....)))))((((((((.....)))))..))))))))))..)))))).)..))).))))))...((((..((((....))))..)).)).........))))))))).).)............)))))))

Thermodynamic Ensemble Prediction

.(((((......((((....)))),,,........{{.(((((..........))))).}}.(((((.(((....})).)|||))..,|{(((((((((({{.,{,{({{({...{..,,....}}..|,.||||,.......{{{..||{,,,,}),|,||||||{....,..,,(((.....))).))))))))))))),))})))))(((((((....(((({,.,(({{{...{{({|||...|||,}}}}...}})).}}{|||....||||{,{{{{.........}}||.||||||.,,((({(....)))}|{{,{,.......}|,|||{,...}}}))}||,|,..|}},.......,,.{.,.(((((((((.{.((........)).,|(((((.(((.{.(((((.(..(((.,||{|.(((((..((||(({.....{{{.,..,..,},(((((((((...)))))))))...}}}..)),.))))).......(((((((......)))))))...,{((......}})).....{||.{,....}},,}((((((((.....))))}},))),.,})))..)))))).}..))).)))))}...{{{{.,((((,...,}}}..}}.}}..,,,..,.))))))))).,.,............)))))))