Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0008100

Sequence Length

454 nt

GC Content

0.4229

UCCCAUAUGAAGGCUCAAAAGAGCGGUAAAGAACAACAGCUUGACAUUAUGAACAAGCAGUACCAACAACUUGAAAGUCGUUUGGAUGAGAUACUUUCUAGAAUUGCUAAGGAAACGGAAGAGAUUAAGGACCUUGAAGAACAGCUUACUGAAGGCCAGAUAGCAGCAAAUGAAGCCCUGAAGAAGGAUUUAGAAGGUGUUAUCAGUGGGUUGCAAGAAUACCUGGGGACCAUUAAAGGCCAGGCAACUCAGGCCCAGAAUGAGUGCAGGAAGCUGCGGGAUGAGAAAGAGACAUUGUUGCAGAGAUUGACAGAAGUCGAGCAGGAGAGAGACCAGCUGGAAAUAGUUGCCAUGGAUGCAGAAAAUAUGAGGAAGCUGUGAUACAUUUGGAAUUAUUAUUUUUUCUUUGCUCAGAAAAGGAAGAUUAUUUAAGCUGCAUUUCUAUCCCUGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.00 kcal/mol

Ensemble Metrics

Free Energy: -108.36

Frequency: 0.0000

Diversity: 125.03

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((........((((....))))((((.......((.(((((..........))))).))........((.((((((.((((.....)))))))))).))......(((((...(..((....))..)..))))).....(((((((((((........(((((.(...((((..(((.....))).))))...).))))))))))))))))......))))..))))(((((...((((((....))..))))...))))...((((....))))(((((.(((((..........(((((.....(((....)))((((((.(((((((((((.((...((((((.((....((.......))....)).))))))....)).)))).........))))))))))))).....................))))))))))))))).....)

Thermodynamic Ensemble Prediction

((((........((((....)))){((,.......,{.(((((..........))))).}),||..,.,((.((((((.{(({.....})}})))))).}}..,|.,({{({...{..,{....}}..}..}))}}.....{{(((({(({,.,,,|.{{(((((.(...((((..(((.....))).))))...).)))))))}}|||||||,.......|||||}}}(({{{...{{||||}..,}}}.))))...}})).,,((((....))))(((((,{((((..........(((((.,,{{{{{...,)))((((((((((((((((((.((...((((((.((.{,.,{.......,}.,,.)}.,)))))....)).}))).........))))))))))))).......,.......,},...))))))))))))))).....)