Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0010700

Sequence Length

619 nt

GC Content

0.4491

AUGAAUUUUGAUAAGAGGCAACAUGAAGCAAGAAUCCAGCAAAUGGAGAAUGAAAUUCACUAUUUGCAAGAAAAUCUAAAAAGUAUGGAGGAAAUCCAAGGCCUUACAGAUCUCCAACUUCAGGAAGCUGAUGAAGAGAAGGAGAGAAUUCUGGCCCAACUCCGAGAGUUAGAGAAAAAGAAGAAACUUGAAGAUGCCAAAUCUCAGGAGCAAGUUUUUGGUUUAGAUAAAGAACUGAAGAAACUAAAGAAAGCCGUGGCCACCUCUGAUAAGCUAGCCACAGCUGAGCUCACCAUUGCCAAAGACCAGCUGAAGUCCCUUCAUGGAACUGUUAUGAAAAUUAACCAGGAGCGAGCAGAGGAGUUGCAGGAAGCAGAGAGGUUCAGCAGAAAGGCAGCACAAGCAGCCAGAGAUCUCACCCGAGCAGAAGCUGAGAUCGAACUCCUGCAGAAUCUCCUCAGGCAGAAGGGGGAGCAGUUUCGACUUGAGAUGGAGAAAACAGGUGUAGGUACUGGAGCAAACUCACAGGUCCUAGAAAUUGAGAAACUGAAUGAGACAAUGGAACGACAAAGGACAGAGAUUGCAAGGCUGCAGAAUGUACUAGACCUCACUGGAAGUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-152.90 kcal/mol

Ensemble Metrics

Free Energy: -163.84

Frequency: 0.0000

Diversity: 127.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((((.((((.((....(((((((..(((.((..((((((((.((((...)))).))))))))..))...)))........((((.....)))).((((.......(((((..(((((.........)))))....))))).......)))).(((((...)))))................(((((.(((.....))))))))(((..(((((((((((((........)))).............(((.(((((...((......))...))))).)))............)))))))))..))).......)))))))...)).)))).))))))..(((((((...((.((((((((((((((.((.((.....)).)).....(((.((....)).)))...(((((((.....((....)))))))))....))))))))...))))))..))...........(((((((.(((((............))))).((((..((((((....))).)))..))))........)))))))..........((......)).((.(((....(((((....)))))..))).))....))).)))).....

Thermodynamic Ensemble Prediction

....(((((.{...(((({.{(((...({.{{{.((..((((((((.((((...)))).))))))))..}}...}}}........((((.....)))).((((.......(((((..((((({....}}},,,,}},,..))))).......)))).{{(((,..||}}}.,..............|||{..{{{.....}))))}))||..{(((((((((((.......}}}))},}}}})))......((({,,,((...(((({...||{{{||,,,.))).,))},.((((({,{,,,{...{((((...(((((((.,{...((((((.......)))}}))...}..((.((((((((((((((.((.({,...|)).)).....(((.((....)).)))...(((((({....,((....)))))))))....))))))))...))))))..)).)))))))...))))}||..|||,.},}}}.,....|||.{.((((..((((((....))).)))..)))).,..||,.,...}}...,..,.},,||,.....,...,..}}))).,,}},.}})))),..})))..,.}.))))..}.))))).