Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0010800

Sequence Length

768 nt

GC Content

0.4362

AUGAAUUUUGAUAAGAGGCAACAUGAAGCAAGAAUCCAGCAAAUGGAGAAUGAAAUUCACUAUUUGCAAGAAAAUCUAAAAAGUAUGGAGGAAAUCCAAGGCCUUACAGAUCUCCAACUUCAGGAAGCUGAUGAAGAGAAGGAGAGAAUUCUGGCCCAACUCCGAGAGUUAGAGAAAAAGAAGAAACUUGAAGAUGCCAAAUCUCAGGAGCAAGUUUUUGGUUUAGAUAAAGAACUGAAGAAACUAAAGAAAGCCGUGGCCACCUCUGAUAAGCUAGCCACAGCUGAGCUCACCAUUGCCAAAGACCAGCUGAAGUCCCUUCAUGGAACUGUUAUGAAAAUUAACCAGGAGCGAGCAGAGGAGUUGCAGGAAGCAGAGAGGUUCAGCAGAAAGGCAGCACAAGCAGCCAGAGAUCUCACCCGAGCAGAAGCUGAGAUCGAACUCCUGCAGAAUCUCCUCAGGCAGAAGGGGGAGCAGUUUCGACUUGAGAUGGAGAAAACAGGUGUAGGUACUGGAGCAAACUCACAGGUCCUAGAAAUUGAGAAACUGAAUGAGACAAUGGAACGACAAAGGACAGAGAUUGCAAGGCUGCAGAAUGUACUAGACCUCACUGGAAGUGACAACAAAGGAGGCUUUGAAAAUGUUUUAGAAGAAAUUGCUGAACUUCGACGUGAAGUUUCUUAUCAGAAUGAUUACAUAAGCAGCAUGGCAGAUCCUUUCAAAAGACGAGGCUAUUGGUACUUUAUGCCACCACCACCAUCAUCAAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-185.50 kcal/mol

Ensemble Metrics

Free Energy: -201.13

Frequency: 0.0000

Diversity: 209.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((((((((((..((((.....(((.((..((((((((.((((...)))).))))))))..))...)))........((((.....)))).((((.......(((((..(((((.........)))))....))))).......)))).(((((...)))))................(((((.(((.....))))))))....((((((((((((.......)))))..)))))))........(((((((..((((((....(((..((.((((((..((............))..)))))).(((.((.....)).)))((((.......))))..)))))...)))))).))))).)).......(((((((((((....(((.((....)).)))...(((((((.....((....)))))))))..((.((((.....((((((((((..((((.........))))..)))))...)))))...)))).))(((..((((((....))).)))..))).............((...(((((((.((......)).((.(((....(((((....)))))..))).)).....(((((...)))))...(((((....)))))....)))))))..))....)))))))))))..))))..)))))))))))))))................(((((.......((((.((......)).)))).......))))).........)))).....

Thermodynamic Ensemble Prediction

.....(((((((.,,,((({,,,((.,({.{{{.((..((((((((.((((...)))).))))))))..}}...}}}........((((.....)))).((((.......(((((..((((({....}}},,,,}},,..))))).......)))).{{(((,,.||}}}.,..............{|{{..{{{.....}))))})),|..{{((((((((((.......}}}))},}}}})))......(((.(((((...{{,,....}).,.))))).)))..))}},.,.||}}}.,,{...{((((...(((((((..{...((((((.......)))},))...}..((.((((((((((((((.((.{{,...|}}.}}.....(((.((....)).)))...(((((({....,((....)))))))))....))))))))...))))))..)).)))))))...))))}||..|}},.{{{||.,....,,({(,((((..((((((....))).)))..))))....||,,,...}}...},,,.,,,{{,.....,...,{{,{{.{{((((...(((((...{{(({,,.,.{,(({((.,.|||},...{{{((,,,,}}||}.....|||||||,,|...,},}}|||||||..,})))}))))}}}||||,,,}},,}})}}..)))))...))},,}}}},}}....}..,.,})),}}|||,,,,,,)))),......}}}))))))}}}