Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0012400

Sequence Length

234 nt

GC Content

0.3846

ACAACAAAGGAGGCUUUGAAAAUGUUUUAGAAGAAAUUGCUGAACUUCGACGUGAAGUUUCUUAUCAGAAUGAUUACAUAAGCAGCAUGGCAGAUCCUUUCAAAAGACGAGGCUAUUGGUACUUUAUGCCACCACCACCAUCAUCAAAAGUAGGAAUUCUGUGGUGUUGGGAAUGUAUACUGAAUUUUCUUGAAGAAAGUGUGACAUUGUCCCCUUCCCCAAAUUUAUGAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-41.40 kcal/mol

Ensemble Metrics

Free Energy: -46.89

Frequency: 0.0001

Diversity: 50.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((....)))))....(((((..((((........(((((((.....)))))))....((((......(((((...((((((.(((((((((.......((.((((....(((((.....)))))......)).)).))......))))..))))).))))))...)))))..))))(((((((...)))))))..(((...)))..))))...........))))).

Thermodynamic Ensemble Prediction

....(((((....)))))....(((((,,{{{{....,,{{(((((((,...,))))))},..,{{|,..,},,..,,,.,,|(((((.(((((((((.......((.((((....(((({.....}))))..,...)).)).))......))))..))))).)))))|((((((((((((...(((,...}}),,.)))))}})))..)))},,,,......,,,..))))).