Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0015600

Sequence Length

402 nt

GC Content

0.3930

GAGAAUGAAGUUUCUAGAUUAGAAGACAUAAUGCAGCAUUUAAAAUCAAAGAAGCGGGAAGAAAGGUGGAUGAGAGCAUCCAAGCGGCAGUCGGAGAAAGAAAUGGAAGAACUGCAUCAUAAUAUUGAUGAUCUUUUGCAAGAGAAGAAAAGCUUAGAGUGUGAAGUAGAAGAAUUACAUAGAACUGUCCAGAAACGUCAACAGCAAAAGGACUUCAUUGAUGGAAAUGUUGAGAGUCUUAUGACUGAACUAGAAAUAGAAAAAUCACUCAAACAUCAUGAAGAUAUUGUAGAUGAAAUUGAGUGCAUUGAGAAGACUCUUCUGAAACGUCGCUCAGAGCUCAGGGAAGCUGACCGACUCCUGGCAGAGGCUGAGAGUGAACUUUCAUGCACUAAAGAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-83.80 kcal/mol

Ensemble Metrics

Free Energy: -91.72

Frequency: 0.0000

Diversity: 72.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......((((((((.(((((((((......((((((((...(((((.(((((...........((((((....))))))....((((((................).)))))((((......))))..((((((.....))))))..........((((((..........))))))....((((...((....)).))))......).)))).)))))..))))))))...)))))....)))).)))))))).....((((((((((.((((((((.....)))).))))...))))))).)))(((....)))((((((........)))))).((((.....))))....)))((.....((((((((((....)))))).)).)).......))

Thermodynamic Ensemble Prediction

(((......((((((((.(((((((((......((((((((...(((((.(((({...........((((((....))))))..,.((((((................),,))))((((......)))),.{(((((((...|||,,.....}},...(((({{.,{.......))))))....||{|...,.....}}....))}}}})}.)))).)))))..))))))))...)))))....)))).)))))))).....,,,(((((((.(((({{{(.....))}}.))))...))))))).,||{((,,{.}})}|||{|...,{{,.||}}||{(({(.....)))).,,.)))((.....((((((((((....)))))).)).)).......))