Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0018000

Sequence Length

494 nt

GC Content

0.3907

GAAGUAAAAUCUCUUCUGGAAGAACUGAGUUUUCAGAAAGGAGAACUAAAUGUUCAGAUUAGUGAAAGAAAAACUCAACUUACACUUAUAAAGCAGGAAAUUGAAAAAGAGGAAGAAAAUCUUCAGGUUGUUUUAAGGCAGAUGUCUAAACAUAAAACCGAACUAAAGAAUAUUCUGGACAUGUUGCAACUUGAAAACCAUGAGCUACAAGGUUUGAAGCUACAACAUGACCAAAGGGUAUCUGAAUUAGAGAAGACUCAGGUGGCAGUGCUAGAGGAGAAACUGGAGUUAGAGAAUUUGCAGCAGAUAUCCCAGCAGCAGAAAGGGGAAAUAGAGUGGCAGAAGCAGCUCCUUGAGAGGGAUAAACGAGAAAUAGAACGAAUGACUGCUGAGUCCCGAGCUUUACAAUCGUGUGUUGAGUGUUUGAGCAAAGAAAAGGAAGAUCUCCAAGAGAAAUGUGACAUUUGGGAAAAAAAGUUGGCACAAACCAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-101.70 kcal/mol

Ensemble Metrics

Free Energy: -112.08

Frequency: 0.0000

Diversity: 109.33

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(......(((((..((((.((.((.(((((((......)))))))...(((((((((.............(((((((..((((...((((((.((...........(((((......))))).((((((((..((((....)))))))))....)))................(((.(((((((...(((..(((((.((.....)).))))).)))...))))))).)))..(((((((((...((((...(((((.(((..(............)..))).)))))......))))...)))))))))((((((((.............((((.((....)).))))((((...........))))............)).))))))....))..)))))).....))))))))))))))))))))..........)).)))))))))))....)..(.(((((...................))))).)

Thermodynamic Ensemble Prediction

,........(((((({((((((,.,..,,|||||}}}..,)))),||...(((((({((.............(((((((.,(({{,,.((((((.((,..........{({((......))))).((((((((..((((....))))})))}...,)))........,,....}}{((.(((((((...(((.{(((((.((.....)).))))).))).,.))))))).))}..(((((((((...,,{,...,,(((.,,(,,(,,{,||.....,}..})}|}||}}......))),,..)))))))))((((((((.............((((.((....)).))))((({...........)}}}........,...)).))))))..}})}..)))))).,,..))),)))))))})))}}))}.......,,....||))},,}}}}..|,||,|||||}}.........,||,,,,...)|},..}