Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0018400

Sequence Length

566 nt

GC Content

0.4170

AACUAAAGAAUAUUCUGGACAUGUUGCAACUUGAAAACCAUGAGCUACAAGGUUUGAAGCUACAACAUGACCAAAGGGUAUCUGAAUUAGAGAAGACUCAGGUGGCAGUGCUAGAGGAGAAACUGGAGUUAGAGAAUUUGCAGCAGAUAUCCCAGCAGCAGAAAGGGGAAAUAGAGUGGCAGAAGCAGCUCCUUGAGAGGGAUAAACGAGAAAUAGAACGAAUGACUGCUGAGUCCCGAGCUUUACAAUCGUGUGUUGAGUGUUUGAGCAAAGAAAAGGAAGAUCUCCAAGAGAAAUGUGACAUUUGGGAAAAAAAGUUGGCACAAACCAAAAGGGUUUUAGCAGCAGCAGAAGAAAAUAGCAAAAUGGAGCAAUCAAACUUAGAAAAGUUGGAAUUGAAUGUCAGAAAACUGCAGCAGGAACUAGACCAACUAAACAGAGACAAGUUGUCACUGCAUAACGACAUUUCAGCAAUGCAACAGCAGCUCCAAGAAAAACGAGAAGCAGUAAACUCACUGCAGGAGGAACUAGCUAAUGUCCAAGACCAUUUGAACCUAGCAAAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-109.60 kcal/mol

Ensemble Metrics

Free Energy: -123.65

Frequency: 0.0000

Diversity: 155.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

...............(((.(((((((...(((..(((((.((.....)).))))).)))...))))))).)))...(.(((((((.((......)).))))))).)..((((((.(...(((.(((.((((.....(((((........((((............))))....((((.((....)).))))((((...........))))............((.((((((((.(((..((((.(((.(((.....))).)))..))))..............((.(((((.(........).))))))).......((((......))))..))).)))))))))))))))......))))....((((((..((.(((((....))))).)).(((((((((.......(((((..(.((((....................)))).)..)))))....)))).)))))...(((....))))))))).............(((((......)))))....(((.(........))))....))))))...)))))))......

Thermodynamic Ensemble Prediction

,,..........}}{(((.(((((((...(((.{(((((.((.....)).))))).))).,.))))))).)},..,(|(((((({.,{......}},})}}}|}.|..{((({{.{.,....||({{(({.,....||{{{.,|,,,|.|||(..{.........}}}}.,,.,,||.|||,..|),}))}|({,...,,......|,,.........,...{{.(({{{{{,,(((,.((((.(((.(({.....})).}))..))))........,,,...,||||,,|.|...,,,,.|.}))}}},......,{({{,..,,,||,...})),))}})))))}{{...........}}....((((((..((.{((((....))))}.)}.,((((((((.,.....(((((..{.{{{{.,.,,..,,.......,.|.)))),),.)))))....)))))))))}...(((....))))))))).............(((((......))))).,,,|,..}}.}}}..,}})},...,,,})),..}))))),...,,,