Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0018800

Sequence Length

218 nt

GC Content

0.4312

GAGAAACUGGAGUUAGAGAAUUUGCAGCAGAUAUCCCAGCAGCAGAAAGGGGAAAUAGAGUGGCAGAAGCAGCUCCUUGAGAGGGAUAAACGAGAAAUAGAACGAAUGACUGCUGAGUCCCGAGCUUUACAAUCGUGUGUUGAGUGUUUGAGCAAAGAAAAGGAAGAUCUCCAAGAGAAAUGUGACAUUUGGGAAAAAAAGUUGGCACAAACCAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-33.50 kcal/mol

Ensemble Metrics

Free Energy: -37.92

Frequency: 0.0008

Diversity: 54.93

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....((((((...(..(((((.((..((.((((............)))).))...)).)))))..)))))))......(((((..(..((..((.......))..))..)..)))))..((((.(((.(((.....))).)))..))))..............))))(........((((.(((((........))).)).))))........)

Thermodynamic Ensemble Prediction

((((..{{((((((...,..(((((.{{..,{.((((..,.........)))).,}...}}.)))))..)})))))......{({{(..{,,{{..,{....,...|,.}},,}..}))}}..({{{.{({.{{|...,,)}}.)))..))))..............))))(........((((.(({((........})},}).))))........)