Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0020100

Sequence Length

614 nt

GC Content

0.4495

AACGGCAGCUUUCAGAAAGGGAGCAGCAAUUGGUGGAGAAAUCAGGUGAGCUGUUGGCCCUCCAGAAAGAGGCAGAUUCUAUGAGGGCAGACUUCAGCCUUCUGCGGAACCAGUUCUUGACAGAAAGAAAGAAAGCUGAGAAGCAGGUGGCCAGCCUGAAGGAAGCACUUAAGAUCCAGCGGAGCCAGCUGGAGAAAAACCUUCUUGAGCAAAAACAGGAGAACAGCUGCAUACAAAAGGAAAUGGCAACAAUUGAACUGGUAGCCCAGGACAACCAUGAGCGGGCCAGGCGCCUGAUGAAGGAGCUCAACCAGAUGCAGUAUGAGUACACGGAGCUCAAGAAACAGAUGGCAAACCAAAAAGAUUUGGAGAGAAGACAAAUGGAAAUCAGUGAUGCAAUGAGGACACUUAAAUCUGAGGUGAAGGAUGAAAUCAGAACCAGCUUGAAGAAUCUUAAUCAGUUUCUUCCAGAACUACCAGCAGAUCUAGAAGCUAUUUUGGAAAGAAACGAAAACCUAGAAGGAGAAUUGGAAAGCUUGAAAGAGAACCUUCCAUUUACCAUGAAUGAGGGACCUUUUGAAGAAAAACUGAACUUUUCCCAAGUUCACAUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-147.60 kcal/mol

Ensemble Metrics

Free Energy: -159.34

Frequency: 0.0000

Diversity: 185.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((.((((((.....)))))).))..((((.(((((..((((((((((((((.((((((.((((.........))))..))))))....((((((.((((..........(((((......))))))))).))))))...(((((.....)))))(((......)))....((((((.......))))))........((((((........))))))))))))).))).(((((((.....(((.((.((((.(((((.((.((((....)).)).))..)))))((.(((.....))).))....(((..((.....(((((.......))))).....))..)))....(((((....)))))..................)))))).)))..((((....))))..(((((..(........)..)))))...(((((...((.((((.....(((((((((((((.....(((..........))).)))))).))))))).............)))).))...)))))..........(((((.(((((...)))))))))).)))))))........))))..))))))))))))((.....))

Thermodynamic Ensemble Prediction

(((.,,.((((((.....)))))).(({.(((((.(((..{(((((({,((({{(,((((((.,,,..,,,,,...}}}}.,||||}}...|||||{{|,|{{{{,,..,{{((((((......,,,,},},..|)))....}||||{|,,..,|||||||...,..}||,,,,((((((.......))))))........{||||{,,......}))),,,,}}}))||,,.,....,,...{{{,..,..{{{..(((({.{{,|||{.,,.)).)).}),})))))|}}))))}}....,.,))).}))}}.)))....(((((.......))))).........|||....))|......,{(({.{{{{{{.,....,,...(((((....{..,(((,...||||..(({{{{{(,{,,{,..,..||}},...(((((...{(.((({..,,.(((((((((((((.....(((..........))).))))))}}}))))),....,,,....,)))).))...))))).,.,,||{..{{{|||{||||,,.,))})))))}.}))))),.......))))).}))))))))})))((.....))