Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CNTRL_0020400

Sequence Length

408 nt

GC Content

0.4191

GAGCAAAAACAGGAGAACAGCUGCAUACAAAAGGAAAUGGCAACAAUUGAACUGGUAGCCCAGGACAACCAUGAGCGGGCCAGGCGCCUGAUGAAGGAGCUCAACCAGAUGCAGUAUGAGUACACGGAGCUCAAGAAACAGAUGGCAAACCAAAAAGAUUUGGAGAGAAGACAAAUGGAAAUCAGUGAUGCAAUGAGGACACUUAAAUCUGAGGUGAAGGAUGAAAUCAGAACCAGCUUGAAGAAUCUUAAUCAGUUUCUUCCAGAACUACCAGCAGAUCUAGAAGCUAUUUUGGAAAGAAACGAAAACCUAGAAGGAGAAUUGGAAAGCUUGAAAGAGAACCUUCCAUUUACCAUGAAUGAGGGACCUUUUGAAGAAAAACUGAACUUUUCCCAAGUUCACAUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.10 kcal/mol

Ensemble Metrics

Free Energy: -85.48

Frequency: 0.0000

Diversity: 99.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((...............))).(((.(((((((.....(((.((.((((.(((((.((.((((....)).)).))..)))))((.(((.....))).))....(((..((.....(((((.......))))).....))..)))....(((((....)))))..................)))))).)))..((((....))))..(((((..(........)..)))))...(((((...((.((((.....(((((((((((((.....(((..........))).)))))).))))))).............)))).))...)))))..........(((((.(((((...)))))))))).))))))).........(((((((.....)))))))....)))

Thermodynamic Ensemble Prediction

.(((...............))).(((.({{{{{{...,,((,.,..(((,.(((({.{{,|||{.,,.)).)}.}}..))))}((.(((.....))).)),...(((..((...,.(((((.......))))).....))..)))....{{{{,....||||}.,................|||||,.},|..{(((....))}}..(((((..(.,......}..))))}..,(((((...{(.((({..,,.(((((((((((((.....(((..........))).))))))}}}))))),,...,,,....,)))).))...))))).,...,,,..((((||(((({...}))))))))).)))))))........,||{{{{|,,,,.)))))),....)))