Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CORO1C_0001100

Sequence Length

477 nt

GC Content

0.4822

CUGGCUCUCUGGAAUCCGAAAAAUAUGCAGGAACCAAUUGCUCUUCAUGAGAUGGACACUAGCAAUGGGGUGUUGCUGCCUUUCUAUGACCCUGACACCAGCAUCAUUUACUUAUGUGGAAAGGGUGACAGCAGUAUUCGCUAUUUUGAGAUCACGGAUGAAUCCCCGUACGUCCACUACCUCAACACAUUCAGCAGCAAGGAGCCUCAGAGAGGGAUGGGUUACAUGCCCAAGAGGGGACUUGAUGUUAACAAAUGUGAGAUUGCCAGAUUCUUCAAACUUCAUGAGAGAAAGUGUGAACCUAUUAUUAUGACUGUUCCCAGGAAGUCUGACCUUUUCCAAGAUGACCUGUAUCCUGACACAGCGGGGCCAGAGGCCGCGCUGGAGGCAGAAGAGUGGUUCGAAGGCAAGAAUGCAGACCCAAUCCUCAUCUCCUUGAAGCACGGGUACAUUCCAGGCAAAAACAGGGAUCUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-125.30 kcal/mol

Ensemble Metrics

Free Energy: -135.31

Frequency: 0.0000

Diversity: 179.14

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((.((((((...............((((.(.((.((((((.(((((...)))))....)))))).)).).))))(((((....(((((((......(((..((((((.......((((((((((....(((((.(((((....((((.(((((((........))))..((((....((((......(((........))).((((...))))..(((((.....))))).))))))))..))).)))).....))))))))))(((((((((..(((.((((((......((....))......))))))..)))...))).)))))))))))))))))))))).)))....(((...(((((.((((...)))).)))))....)))....(((.(((.((((..(((.((.((........)))))))))))))).))))))).)))...)))))....)))))).))....

Thermodynamic Ensemble Prediction

.{((,,,{{(({..{{{.........{{,|||.||.{(((((.((((,,,,||}}}....})}}}}.|{{{{{({{((((({{{,((((,.(((....)))..}}||.........||||||||{{..,}|||||,|||||}}.{((((((((,,(({{{.....,,}}.}}}}}.....{{{,.,,,,{,.,{({.(({{...((((...|.{{.{((,,,..}}},)))..)))),,.)))).))))....}}}))))}}||||({{{{{{{{,.{((.(({(({..,..,((....}}......))))))..}))..,}|)}}|)}))}}}}}}}}}}}}}}||||||,.,,(({...(((((.((((...)))).))))),,|,}|},.,,({(|{{{||||(|,,,..||},{..,,,.,,)))})))))))))},})}}))}.,,,}}},)))}....}})}))}))}},,