Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DENND4C_0003100

Sequence Length

455 nt

GC Content

0.4088

AAAAUACAGUAGCAGCCAUGAUAGAAGACAAAGGACCAAGAGUGACAGACUACUUUGUCGUAGCUGGUCUCACUGACACAUCUACUCUUUUGGAUCAAGAAAUAAAUCGUUUAGAUACUAAGUCAACUGGACCUAAAGCUCCAAUUACAGACAUUGCCAUUAUUAUCAAAUCAGCUGGAGAAACAGUACCUGAAGGUUACACCUGUGUAGAAGCCACUCCAUCAGCUCUCCAAGCAAACUUGAACUAUGGAAGUCUGAAAAGCCCAGAACUUUUCCUCUGUUAUAAGAGAGGGAGAGAUAAACCACCGCUUACAGAUAUUGGUUACAAAUACUUUCCAAGACUGGACCUUAAGCUUUUUGACAGACCGCAGGAGUUGAAACUUUGUUUUAGUAGACACCCUACUGGGAAUAGCAUUACAAAGAGUCCACCUCUCAUGGCUAAGAGAACUAAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.20 kcal/mol

Ensemble Metrics

Free Energy: -104.19

Frequency: 0.0000

Diversity: 120.42

Structure Visualization

Structure Prediction

MFE Structure Prediction

.............((((((((.((((((((((((((((((((.((((((....))))))((((.(((((.....))).)).)))).))))))).)).........(((.....)))......(((((((((........)))...............................((((......)))).((((..(((.....((((..((((((...(((((.((.....((((....))))..)))))))..((((.......)))).((((((((((........))))))))))...(((((...((...))....)))))..........((((....))))......))))))..))))))).))))))))))..)))))))))(((((.....))))).(((....(........)..)))..)).))))))))...............

Thermodynamic Ensemble Prediction

........,,...((((((((.((..(((,,,{(((((((((.((((((....})))))((((.(((((.....))).)).)))).}}}}}}}.|}..,,.....,{{.,,,.|}}.....|||...{(({|....,{{|||,....(((((.{{.((((.....((((....((((((((....{,.,{{{,.(({,||,.||{{|,||......,,,},,}}}.)))))}}))....))))...))))}}))))),{{{{{...,..((((((((((........))))))))))...{{{{{..,{{...,}....}))}}..........{(({....)))}.....,)}}})}||,,.,,}},.})))))},,..|||||||||{((({...,,|}}}}))).....,...,}}}}).})),..)).)))))))).......,,......