Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DENND4C_0012100

Sequence Length

252 nt

GC Content

0.4444

UGGAGCCAACUUUAGCACCUUGCUAAUGAAUCUGGGUCCUGAGAAUUGUGCAACACUGCUGCUCUUUGUUUUACUUGAGAGUAAAAUUCUGCUGCAUUCUCUUAGGCCAGCUGUCUUGACUGGGGUAGCUGAAGCUGUUGUAGCUAUGAUCUUUCCAUUUCAGUGGCAAUGCCCAUAUAUUCCCCUUUGUCCUCUUUCACUGGCUGCAGUGCUUAGUGCACCUUUACCAUUUAUAGUUGGAGUUGACUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.40 kcal/mol

Ensemble Metrics

Free Energy: -65.51

Frequency: 0.0003

Diversity: 58.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((.(((((((((((...))))))...........(((((((...(((((.((....(((((((..........)))))))......)).)))))..)))))))((((((((..((...(((((.(((((.((..((((((((((((............((.(((((.................)))))))...))).))))))))).)))))))..)))))...))...))))))))))))).)))...

Thermodynamic Ensemble Prediction

..(((.(((((((((({...})))},.......,,,.(((((((...(((((.((.,..(((((((.,,...,,..)))))))......)).)))))..))))))){(((((((..{{...{{(({.(({|{(((..{(((((((((((.......,....{{.((,{{,{......,,,,.,.,..,},......))).))))))))).))))}}},,)))},...}}...}}})))))))))).)))...