Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DNAJC6_0000300

Sequence Length

472 nt

GC Content

0.5339

GCUCCCUUCAAGGUCCUCCCGCCCUGUACCCACCUCCUCUCUACCUGCCUGCGGUGAUUUCGAAGCUCUCGCCACGAUAAACUAUUUCCAAGCACACUCAGUCCUGUCCUCGCCAGGGCCUCAACUCACAGCCAAUCACUGACUCACUCCAUUCAUUCAUUCCACAAUUUUUAUCGAGCCCCUCCAUCUGCCUUGGCCGGAGAACACGAUGGGCAAAGCCCGGAUCUUGGAACUACUUCUAGAGAGGAAGACAGACAUUACACACGCAAAACAGAGAAAGCCCGGUACACAUUGCUAUGUGCGCUUAGAGGGAAUCAGUCUGCUGACAGAGGAAAAAAGGCAGGUCCCCGAGCUUCCAUGGCAGGCGGACUGGGAAGGCCUCUCCGAGGCAUUGCAAGUCAGCGGAGACCCGAGGACUGACUAGGAGUUACUCUAGCGUGAAGCCGAGUAAUAGAGAAUAGCAAGUGGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-120.30 kcal/mol

Ensemble Metrics

Free Energy: -128.69

Frequency: 0.0000

Diversity: 151.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...((((..(((((.((.(((.((.......(((......((((((((((((((...(((..((....))..)))........(((((((........(((((((.(((((((((((.........(((.......)))..................................(((...))).....))))))))..))).)))....((((...)))))))))))))))...(((((.....)))))..........))).)))....((((.....((((((.(((((....))))).)))....)))......))))((.....))......))))))))....)))....)).))).)).)))))..))))))((.(((...((.((((.((((..(((....)))..))))........(((((((..((.....)).)))))))........))))))))).))

Thermodynamic Ensemble Prediction

(,..{({{,..||{|(,,({((,.((({{{...{{..(((({..,(((,(({,(((,..{{(,,(({{{{|,..}}}........{((((((..,.,...(((.(((.({{((((((((.........{{(.......}))......,,........................,.{||...}}|.....)))))))).,))).}}}.}}}((((...)))))},}))))))).,.,{{{|.,,}})}}})...}..,,,.}.}..}},....}))),..},,,)))}}},,.,{{|{{|,|.||||.{.((({.,..,((({{(..............)))})))))),)))),},)))})))))}))}}},,)}}}||((,{{{},}||.{{,{.((((.,(((....)))..)})),,},.,..(((((((..((.....)).)))))))...,..,.)},,))))}.))