Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DNAJC6_0002700

Sequence Length

244 nt

GC Content

0.4098

UUUAAAAACAGACACUUUUAUUUCCUGCAAACCUGGAGAUACUUGUUUCAUCACCUAAGAAUCAUUUGACUGCAUAUGCUGAGAAAAAGGGAAAUUCGUGCCUGUGAAAUCUAACAAGAGCCCAGCACAAGGAGUGGUUAUUAUUGAGUCGAGAAUUUUUGGGAAAAGUAACACGUGGAGAGUCAAUUUUUGAGUGGAAGGAGUCUGAAGAGAGGGUAGGAACCAACCUCCUACUACCCACCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.40 kcal/mol

Ensemble Metrics

Free Energy: -48.96

Frequency: 0.0000

Diversity: 53.05

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((..(((.(((((((((((.........)))))))..((((......(((((((((..(((((((..(((.(((.............((((((((.((.(...(((....)))..)))))))...)))))))...)))..))))))).)))))))))......))))...)))).)))..))))))))(((..((..(((....))).(((((((.......))))))).))..))).

Thermodynamic Ensemble Prediction

((((((((..(((.((({{((((((.........))))))|{.((((.,....(((((((((..(((((((.,{,{,{{{,.......,,....,||{{{||{(,{...{{{....})}.,,}}}))}...,.,}},,...}}}..))))))).)))))))))....,.)))).},}))).)))..)))))))}(((..((.,({{...,,||{((({({{.....,,))))))).))..))).