Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DNAJC6_0002800

Sequence Length

481 nt

GC Content

0.4262

UUUAAAAACAGACACUUUUAUUUCCUGCAAACCUGGAGAUACUUGUUUCAUCACCUAAGAAUCAUUUGACUGCAUAUGCUGAGAAAAAGGGAAAUUCGUGCCUGUGAAAUCUAACAAGAGCCCAGCACAAGGUGCCUCAUCUCCAGACAUGGAGCCCAGCUAUGGGGGAGGUCUCUUUGACAUGGUAAAAGGAGGUGCAGGGAGGCUCUUUAGUAACCUAAAGGACAACUUGAAAGACACCCUCAAAGACACAUCUUCUAGAGUGAUACAAUCUGUGACCAGCUACACAAAGGGAGAUUUAGACUUCACUUAUGUUACCUCCAGAAUUAUUGUGAUGUCCUUUCCUCUGGACAAUGUUGACAUAGGAUUCAGGAAUCAGGUUGAUGACAUUCGAAGCUUUUUGGAUUCCAGACAUCUUGACCACUACACAGUAUACAAUCUGUCACCUAAGUCUUAUCGAACUGCCAAGUUUCACAGCCGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-102.10 kcal/mol

Ensemble Metrics

Free Energy: -112.46

Frequency: 0.0000

Diversity: 186.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....((((((.......(((((((.........))))))).))))))....)(((((((......((((....(((((((.......((..((...(((.(((.(((.(((((..(((((...((((...)))).....(((((....)))))((((....))))...((((((((((.(((...........)))))))))))))((((((....))))))..((((((((....(((.((..((((....))))..)).)))........((((........))))(((((((.......)))).)))........(((.(((((..(((.((((((........)))))....).)))...))))).))).))))))))............)))))))))))))))).))).))..))......)))))))......))))......)))))..(((((....))))).......))

Thermodynamic Ensemble Prediction

((.....{{{((,,,...(((((((.........))))))).,{||,|,,{{,{{{..{{.,,...,|,{,{{....||{|.{,.,.||{{,..,{{({({(((((,..(((....}}},.,,,,}}|||||}||{{{..(((((....)))))((((....)))),))}|}||}}}||.{,||||....{{{{||||||||,||,{((((((....))))))).,..}}}}.....|{|,||,.{{{{....}))),,)).))),,....,}||||},{.{{,.,},,.,{{((({{,,{{.},}}.|||,|||||}}|||,,,.,,.,}|}},(((((........))))}..,,}|}}|||||{{{.,(({,{(((((((,,,...,|||{|},,,,}}|)))})),||||.,|||...,,,...,|})...}}},}))},.,)),)))))),,,||{{{....}))))},,))),))