Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DNAJC6_0009700

Sequence Length

227 nt

GC Content

0.4229

CUACACAAAGGGAGAUUUAGACUUCACUUAUGUUACCUCCAGAAUUAUUGUGAUGUCCUUUCCUCUGGACAAUGUUGACAUAGGAUUCAGGAAUCAGGUUGAUGACAUUCGAAGCUUUUUGGAUUCCAGACAUCUUGACCACUACACAGUAUACAAUCUGUCACCUAAGUCUUAUCGAACUGCCAAGUUUCACAGCCGGGAACAUCAAGAUACGCUGGCCUUAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.00 kcal/mol

Ensemble Metrics

Free Energy: -46.96

Frequency: 0.0003

Diversity: 69.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((.((((((((((.......)))).))).))))).((((........((((((((((........)))))........((((((((.(((..(((((.((.((..(((((((....)))))))..))..)).))))).......((((........))))..))).))))))))..((((....)))))))))(((((...............)))))....))))

Thermodynamic Ensemble Prediction

.({.({{{((((((.......}))).))).)))}}.((((........{((({(((((........)))))....,{|,|(((((({.{((..,(((((((,,,..,,{{{{{,.,.||||}}},})}||,|.}}}|,..,,,....|})...)))}))),..))),))))))}},|{(((....)))})}}}}(((((...............)))))....))))