Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DSCAM_0001200

Sequence Length

297 nt

GC Content

0.5152

AUGCAAAGAGUUUAGCUGAAAUGCUCAUGAGUAAGAAUACCCGGACUUCAGAUACGUUAAGCAAGCAACAGCAGACCCUGCGAAUGCACAUCGACAUACCCAGGGCUCAGCUUUUGAUUGAAGAGAGAGACACGAUGGAGACCAUUGAUGAUCGCUCCACGGUUCUGUUGACGGAUGCUGACUUUGGAGAGGCAGCUAAGCAGAAGUCCCUGACGGUCACUCACACGGUCCAUUACCAAUCGGUGUCUCAGGCCACUGGGCCCUUAGUGGAUGUUUCAGACGCUCGGCCGGGAACGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.70 kcal/mol

Ensemble Metrics

Free Energy: -85.83

Frequency: 0.0002

Diversity: 108.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

.........(((((((((.....(((..((((.((.....(((..(..((((..(((....(((.(((.(((.(((((((.(.(((........))).).))))).)).))).))).)))....(((.((((((((((...)))))).)).)).))).)))..))))..).)))...)).))))..)))...))))))))).......(((((.((.((((.....(((.....)))....)))))))))))...((.((((...((((..((...))..)))).)))).)).....

Thermodynamic Ensemble Prediction

.{((...{{((,,,,,,,....}|||.,,,||,.,....{((({.{,.,{({..(((,...{,.{((..,(({(.,,|||},.,||}{{{{{.{|,|,,.,||||{||{|||{||,..,,}}}}|.((((((((((((.((((.,{((((((((,||,|.|{{{(({{{..,,,.,(((,.{||..,,),),)))),.)))))}}.,}|,,}})))))).))}...)))).....)),,))}})))))).,,...)))))}}}},|)},)})}}..,,},))}),))))))).....