Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DSCAM_0003600

Sequence Length

388 nt

GC Content

0.5129

GCUCCCAAGAAACAUUUGCAAAAUGGGAUUAUCCGUGGCUACCAAAUAGGUUACCGAGAGUACAGCACUGGGGGUAACUUCCAAUUCAACAUUAUCAGUGUCGACACCAGCGGGGACAGUGAGGUUUACACCCUGGACAACCUGAAUAAGUUCACUCAGUACGGCCUGGUGGUGCAGGCCUGUAACCGGGCCGGCACGGGGCCUUCUUCUCAGGAAAUCAUCACCACCACUCUCGAGGAUGUGCCCAGUUACCCCCCCGAAAAUGUCCAAGCCAUAGCAACAUCACCAGAAAGCAUAUCAAUAUCCUGGUCCACACUUUCCAAGGAAGCCUUGAAUGGAAUUCUCCAGGGGUUCAGAGUCAUUUACUGGGCCAACCUCAUGGACGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-108.10 kcal/mol

Ensemble Metrics

Free Energy: -115.57

Frequency: 0.0000

Diversity: 109.14

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((................)))))...(((((((..(((.....)))..))((((((......((((((((((...((............(((.((((..(......)..)))).))))).)))).))))))....(((((..(((....(((.((.((((((((((((....)))....)))))))))..)).)))....))).)))))..............))))))((((.((.(((((((.(((((...((((.(((....((....))......(((((................)))))..))).))))(((((...)))))..((((....)))))))))............))))))))).))))....))))).

Thermodynamic Ensemble Prediction

..(((((................)))))...(((((((..(((.....)))..))((((((.....,{{((({({((((,...,,{(.,,,,..,{{,|||{,.(,,,,,,},.}}}|,|||({{{..,.,,.,||....}}|}|,,}}}))},))}})}.}{||||}|||{(({.((((((....)))))).}))).|||||,{{({,..,|||.............}})))}||||,{|.|||||||,||||||..,,...{,{,,..((....))......(((((................)))))......,}},(((((...)))))..||||....)))}))|||,,,,........})))))))}.))}}..,,))))).