Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DSCAM_0004600

Sequence Length

394 nt

GC Content

0.4975

AUUUUGCCAACUGUGAGAGAAGAUUCUGGUUUCUUUUCCUGCCAUGCUAUUAAUUCUUAUGGGGAGGACCGUGGAAUAAUUCAGCUCACAGUGCAAGAGCCCCCAGACCCUCCCGAAAUUGAGAUCAAAGAUGUCAAAGCACGCACAAUUACGCUCAGGUGGACCAUGGGGUUUGAUGGAAACAGUCCCAUCACAGGCUACGAUAUUGAAUGCAAAAAUAAAUCAGACUCCUGGGAUUCUGCUCAGAGAACCAAAGAUGUUUCCCCUCAGCUGAACUCGGCCACCAUCAUUGAUAUCCACCCUUCCUCCACCUACAGCAUCCGCAUGUACGCCAAGAACCGGAUUGGCAAGAGCGAGCCCAGCAACGAGCUCACCAUCACGGCGGACGAGGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-95.70 kcal/mol

Ensemble Metrics

Free Energy: -102.95

Frequency: 0.0000

Diversity: 103.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((..(((((((((((((........))))))).(((..((((...........(.((((((....(((.........((((.........))))..)))...)))))).)..((((.(((...))).)))))))).))).......(((((((((((....(((((.((((((........))))))((((....((((((.........))))..)).....))))((.((((......))))))...((((((........((((....))))..........)))))).)))))...)))))))(((((....)).)))..(((((........)))))..))))((((.(......).))))....)))))).)).))))....

Thermodynamic Ensemble Prediction

.{(((((,.{(((((((,(((,({{{{{,,.|||||||{,,{,,{(,,.........,,|}||||||}}}.,||}}}..}}}.,|}}}}}}}))}}))||,.|,.,..||,}||,...((((.(((...))).)))),,,..|,........((({(((((((....(((((.((((((........)))))){{{{....({({((,.........,,...}|,|...}}}}((.((((......))))})...{{{{{{........((((....)))).........,)))))).)))))...))))))){{{{{....}}.}}}..(((((........)))))..|||}((((.{......).))))......,))),)).,,.))}..