Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DSCAM_0005700

Sequence Length

250 nt

GC Content

0.3680

GAAUCCUGAAAGUGAAUUCCUACCUUUUCAGCCAAAUGUAAUCUACUUCCUGUGUUUUCAGCCACCACAUCUGAUUAUAGGUAUGUGGCAUAUCUGCAGUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAUCAAGCAUGUCGUGGAGGAAGACAGUGGCUACUACCUCUGCAAGGUCAGCAACGAUGUGGGCGCAGACGUCAGCAAGUCCAUGUACCUCACGGUUAAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.50 kcal/mol

Ensemble Metrics

Free Energy: -40.81

Frequency: 0.0009

Diversity: 74.84

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((.(........).))))))).......(((((.........(((((((..((((.(((((((((((((....))))(((....))).....................................................))).)).)))).))))..)))))))((.(((...((((.....)))).))).))...(((((.((((((........)))..))).)).))))))))...

Thermodynamic Ensemble Prediction

.....(((((((,(......,,}.}))))))......,({,,,.,,...{,,((((({{.,((((,(((((({{,{,{(||,,}))}{||....))}.....................................................,,,..}.}}}}.}|}}..}}})))},,,{{{.,,(({(,,,,.}})}.})}..,.,|||{|||||||||,..,}..,))).,))),}}.}},)))}}...