Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_DSCAM_0008700

Sequence Length

293 nt

GC Content

0.4061

GAGUUUGUCAAUAGGAAGCAGGUGGUCAGUUAGGCAAUCAUGAUAGGUGAGGGUCUGGUACCUCACUGUCUAGAUGUGGUGAUCUGGGAAGUUUCAGUUCUUUGAUGUUAUCUGGGAGGCCCUCAUGGUUAGUUUCCUAAGAAAAGGACUUAGAUAAGACAAAUGUAAUUUUGUCAAGUUGUAAGACUGGGAGGGUCAAUUUCUAUGUUUAUUCAAAAGAAACUAUAAACAUUAAUUCUAUAGGACAGUUGGGCCAGCAUCAGUUGUAGUAGCUGUGGUAGAUGGUGGUAGUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.20 kcal/mol

Ensemble Metrics

Free Energy: -76.42

Frequency: 0.0002

Diversity: 89.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((...((((((((((((.(((...((((((..((((.....))))..)))))).))).).))))(((((((.....(((.(((((.......))))).)))..)))))))..(((((((..(((.....((((......))))(((((((..((((((......))))))..))).)))))))..)))))))..))))))).......))))....(((((...(((((..(((((...(((((((...((((....))))...))))))).))))))))))))))).

Thermodynamic Ensemble Prediction

,,..(((((.((((((.(((((.(((...((((((..((((.....))))..)))))).))).).))))((((((,.....|||}||{{,.{,,.|,|||||,||}..,}}}||||,(((((((..(((,....((((......)))){{{{|{{..((((((......))))))..}}}.,},))))..)))))))...}}}}||{{,,{,,},,,.,,.,||||}}}}||...}}))}}..)))}|||..((((.((((,||||...}))))},.,,,)))).))))..,.