Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EIF3J_0000600

Sequence Length

498 nt

GC Content

0.3394

GAUAACUGGGAUGACGAUGAUGAUGAAAAAAAAGAGGAAGCAGAAGUAAAACCAGAGGUAAAAAUUUCAGAAAAGAAAAAAAUAGCAGAGAAGAUAAAAGAGAAAGAACGGCAACAGAAGAAAAGGCAAGAAGAAAUUAAAAAGAGGUUAGAAGAACCCGAAGAACCUAAAGUGCUAACACCAGAAGAACAAUUAGCAGAUAAACUGCGGCUAAAGAAAUUACAGGAAGAGUCAGACCUCGAAUUAGCAAAGGAAACUUUUGGUGUUAAUAAUGCAGUUUAUGGAAUAGAUGCUAUGAACCCAUCUUCAAGAGAUGACUUUACAGAGUUUGGAAAGUUACUAAAAGAUAAAAUUACACAAUAUGAAAAGUCACUAUAUUAUGCCAGUUUUUUGGAAGUCUUAGUUCGAGAUGUGUGUAUUUCAUUGGAAAUUGAUGACUUGAAAAAAAUUACCAAUUCACUGACUGUGCUUUGCAGUGAAAAACAGAAGCAAGAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-74.30 kcal/mol

Ensemble Metrics

Free Energy: -83.30

Frequency: 0.0000

Diversity: 116.11

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((((.((((..(((.((((..................(((((...(((...)))....))))).....................((((((...............((.............)).................(((((....(....)....)))))....(((((((((((((((........((((.....)))).(((((..............(((......)))...)))))........)))))))))))).....)))((((((((........))))))))..))))))...((.((((((..((.....))..))))))))...........................)))).))).)))).)))))).))(.....((((..(((((((((....))))))(((((.((((..............)))).)))))((((((.(........)))))))......)))..))))...)

Thermodynamic Ensemble Prediction

{{.{(((((.((((..,((.{{{{................|...,||...{||.,.|||....,||||......,,,.....,,,{,.....................,,{{............,||.................,((((....,,,,,)....}}|||,,,.{({((((((((((((........((((.....)))).(((({.....,,..,,,..,,,.....,)),...)))))........)))))))))))).....))}{|||{{{{........))))}}}}.}||||}}...{{.(((((({.((....|||..}}}|||}}....,.,.......,..,...}}.,,,)))),),,.)))).)))))),)){....,((((.,(((((((((....})))))|{{({.{{{{..,........,..)))).)))}|((((((.(........))))))),.....)))..)})}...}