Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_EP300_0003300

Sequence Length

168 nt

GC Content

0.4286

AUGAAUUAAUCAACUCUACAGAAUUGGGACUAACCAAUGGUGGUGAUAUUAAUCAGCUUCAGACAAGUCUUGGCAUGGUACAAGAUGCAGCUUCUAAACAUAAACAGCUGUCAGAAUUGCUGCGAUCUGGUAGUUCCCCUAACCUCAAUAUGGGAGUUGGUGGCCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.50 kcal/mol

Ensemble Metrics

Free Energy: -39.04

Frequency: 0.0032

Diversity: 40.08

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....................(((((......)))))((.(.((((....)))).).))......((((((........))))))(((((((((..(((........))).))))..))))).))((((.....((.(((((((((...)))).))))).)).))))

Thermodynamic Ensemble Prediction

((,.....{{{,.,.{{,{...(((((......))))},|}|}{{{{....)))}.}.,,......((((((........))))))(((((((((..(((........))).)))}..))))).))((((..,..{(,(((((((({...}))).))))).)).))))